Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 2.3e-99 365.9 233 100.0
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 2.3e-99 365.9 233 100.0
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.8e-96 354.4 233 96.6
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 2.1e-89 332.8 233 91.4
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.1e-88 330.5 234 76.9
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-82 310.5 234 76.5
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.5e-82 309.3 234 76.9
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 5.6e-82 308.1 234 88.0
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 7.3e-82 307.8 234 77.8
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 9.5e-82 307.4 234 70.5
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.8e-81 305.8 234 76.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.8e-81 305.8 234 76.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 3.6e-81 305.4 236 76.3
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 6.2e-81 304.7 234 76.1
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 6.2e-81 304.7 234 79.5
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.4e-80 303.5 234 76.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.4e-80 303.5 234 79.5
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.4e-80 303.5 234 78.2
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.4e-80 303.5 234 73.5
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.8e-80 303.1 234 85.9
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.3e-80 302.8 234 82.1
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.1e-80 302.4 234 82.9
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 3.1e-80 302.4 237 76.4
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 5.2e-80 301.6 234 74.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 1.5e-79 300.1 234 75.6
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.6e-79 299.3 234 74.8
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.6e-79 299.3 234 80.8
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 4.4e-79 298.5 234 74.8
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 5.8e-79 298.1 234 74.4
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 5.8e-79 298.1 234 74.4
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 5.8e-79 298.1 234 77.8
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 5.8e-79 298.1 234 78.2
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 5.8e-79 298.1 233 75.1
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 7.6e-79 297.7 234 74.4
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 7.6e-79 297.7 234 74.4
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 7.6e-79 297.7 234 77.8
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 7.6e-79 297.7 234 79.5
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 9.9e-79 297.4 234 73.9
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 9.9e-79 297.4 234 73.9
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 9.9e-79 297.4 234 73.9
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 9.9e-79 297.4 233 77.3
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.3e-78 297.0 234 69.2
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.7e-78 296.6 234 73.9
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.2e-78 296.2 234 73.9
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.2e-78 296.2 234 73.9
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 2.2e-78 296.2 234 76.9
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.2e-78 296.2 234 85.9
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 2.9e-78 295.8 234 70.9
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.9e-78 295.8 234 73.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 3.8e-78 295.4 234 77.8
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 4.9e-78 295.0 235 78.7
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 6.4e-78 294.7 234 73.5
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 8.4e-78 294.3 232 74.1
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-77 293.9 234 74.8
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.1e-77 293.9 248 69.8
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.4e-77 293.5 234 78.2
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.4e-77 293.5 234 72.2
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.4e-77 293.5 234 77.4
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.9e-77 293.1 234 76.1
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.9e-77 293.1 233 77.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.4e-77 292.7 234 73.9
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 3.2e-77 292.4 234 73.5
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 3.2e-77 292.4 234 73.5
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 3.2e-77 292.4 234 73.5
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 3.2e-77 292.4 234 73.5
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.2e-77 292.4 234 73.9
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 5.4e-77 291.6 234 73.5
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 5.4e-77 291.6 234 73.5
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 9.2e-77 290.8 234 75.2
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 9.2e-77 290.8 234 75.2
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.6e-76 290.0 234 75.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.1e-76 289.7 235 67.2
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.1e-76 289.7 234 73.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.7e-76 289.3 234 82.5
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 2.7e-76 289.3 234 72.6
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 2.7e-76 289.3 234 73.5
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 3.5e-76 288.9 233 74.2
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 3.5e-76 288.9 235 77.4
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 6.0e-76 288.1 234 75.2
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 6.0e-76 288.1 234 67.1
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 7.8e-76 287.7 245 71.4
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.8e-76 287.7 234 70.9
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.3e-75 287.0 233 68.2
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 3.0e-75 285.8 234 82.5
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 3.9e-75 285.4 233 72.5
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.1e-75 285.0 233 78.1
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 6.6e-75 284.6 234 76.1
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 6.6e-75 284.6 234 76.1
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 8.6e-75 284.3 234 70.9
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.1e-74 283.9 233 76.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.5e-74 283.5 233 72.1
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.5e-74 283.5 235 74.9
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.9e-74 283.1 233 73.4
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 4.3e-74 282.0 234 69.2
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 9.6e-74 280.8 234 70.9
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 9.6e-74 280.8 234 70.9
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.6e-73 280.0 234 82.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 2.1e-73 279.6 234 71.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 3.6e-73 278.9 234 73.1
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 4.7e-73 278.5 234 69.2
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 4.7e-73 278.5 234 69.2
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.7e-73 278.5 238 73.1
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.2e-73 278.1 235 71.9
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-72 277.3 235 71.1
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.1e-72 277.3 234 74.8
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.4e-72 276.9 235 70.6
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.4e-72 276.2 236 71.2
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-72 276.2 233 82.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.4e-72 276.2 241 75.1
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 6.9e-72 274.6 271 71.2
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 6.9e-72 274.6 235 68.5
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 8.9e-72 274.2 233 76.8
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-71 273.5 233 82.4
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.4e-71 271.9 233 71.2
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 7.6e-71 271.2 233 81.5
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 7.6e-71 271.2 233 82.0
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-70 270.4 233 81.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 2.9e-70 269.2 229 76.4
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 6.4e-70 268.1 234 71.8
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 8.4e-70 267.7 234 65.8
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.9e-69 266.5 239 73.6
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 9.3e-69 264.2 237 70.0
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 4.6e-68 261.9 233 74.7
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 4.6e-68 261.9 234 68.4
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 4.6e-68 261.9 234 77.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.7e-67 260.0 234 67.9
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.3e-67 259.6 253 60.1
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.9e-66 256.5 288 54.2
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 7.3e-66 254.6 234 78.6
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-65 253.8 234 67.5
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 1.6e-65 253.4 234 71.4
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 4.8e-65 251.9 234 77.8
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.3e-62 243.8 238 63.4
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.1e-61 240.7 238 60.9
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.1e-60 236.5 219 69.4
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 6.2e-57 224.9 234 59.4
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-56 223.8 255 69.0
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 1.8e-56 223.4 236 59.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 1.1e-48 197.6 195 67.2
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 9.0e-48 194.5 189 68.3
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 9.0e-48 194.5 121 82.6
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 7.6e-47 191.4 122 81.1
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.3e-46 190.7 123 80.5
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 2.9e-46 189.5 237 56.1
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 4.9e-46 188.7 118 83.1
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.5e-46 188.3 121 79.3
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.9e-45 186.8 234 57.7
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.0e-43 181.0 190 68.4
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.0e-43 179.5 112 83.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.9e-43 179.1 112 82.1
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.3e-42 175.6 112 81.2
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.0e-38 164.5 236 50.4
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.9e-37 160.2 122 68.9
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 3.9e-35 152.5 247 47.4
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 7.4e-34 148.3 176 64.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 3.1e-32 142.9 141 70.2
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 9.4e-29 131.3 73 90.4
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 2.1e-28 130.2 73 86.3
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 3.6e-28 129.4 73 87.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.0e-27 126.3 73 84.9
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.1e-27 125.6 73 84.9
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.1e-24 116.3 72 77.8
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.0e-23 113.6 186 55.9
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 4.5e-23 112.5 73 72.6
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 5.0e-22 109.0 71 78.9
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 6.1e-20 102.1 65 78.5
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 6.1e-20 102.1 230 39.1
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.8e-17 93.2 181 44.2
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 6.3e-17 92.0 233 36.9
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.2e-15 87.8 44 93.2
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.2e-15 87.8 75 69.3
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 7.2e-13 78.6 56 71.4
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.8e-09 65.9 92 50.0
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.1e-08 63.2 93 47.3
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 4.5e-07 59.3 48 58.3
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.3e-06 57.8 65 47.7
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 1.3e-06 57.8 49 65.3


User provided reference genes

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