Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g150121.1 Solanum lycopersicum HOM05D003445 ORTHO05D004114 1.8e-63 245.7 125 100.0
Solyc11g007940.2 Solanum lycopersicum HOM05D003445 ORTHO05D004114 2.9e-45 185.3 96 95.8
Sopen11g003810 Solanum pennellii HOM05D003445 ORTHO05D004114 2.9e-45 185.3 96 95.8
PGSC0003DMG400027335 Solanum tuberosum HOM05D003445 ORTHO05D004114 1.2e-43 179.9 96 93.8
CAN.G135.24 Capsicum annuum HOM05D003445 ORTHO05D004114 3.3e-36 155.2 96 83.3
Nitab4.5_0010505g0010 Nicotiana tabacum HOM05D003445 ORTHO05D004114 8.0e-35 150.6 99 81.8
Peaxi162Scf00409g00218 Petunia axillaris HOM05D003445 ORTHO05D004114 2.6e-33 145.6 96 78.1
Sopen05g033900 Solanum pennellii HOM05D003445 ORTHO05D004114 1.7e-32 142.9 93 79.6
Solyc05g055450.3 Solanum lycopersicum HOM05D003445 ORTHO05D004114 2.8e-32 142.1 93 79.6
PGSC0003DMG400023482 Solanum tuberosum HOM05D003445 ORTHO05D004114 4.9e-32 141.4 97 74.2
Nitab4.5_0002692g0090 Nicotiana tabacum HOM05D003445 ORTHO05D004114 6.3e-32 141.0 97 77.3
Nitab4.5_0000096g0210 Nicotiana tabacum HOM05D003445 ORTHO05D004114 5.4e-31 137.9 97 76.3
CAN.G1891.4 Capsicum annuum HOM05D003445 ORTHO05D004114 3.8e-29 131.7 111 65.8
Peaxi162Scf00253g00318 Petunia axillaris HOM05D003445 ORTHO05D004114 7.3e-28 127.5 132 56.8
SalBow6G4419 Salvia bowleyana HOM05D003445 ORTHO05D004114 8.9e-26 120.6 90 71.1
SalBow4G0167 Salvia bowleyana HOM05D003445 ORTHO05D004114 1.2e-25 120.2 92 66.3
Migut.F01911 Erythranthe guttata HOM05D003445 ORTHO05D004114 2.0e-25 119.4 89 68.5
Cc02_g10580 Coffea canephora HOM05D003445 ORTHO05D004114 5.8e-25 117.9 89 70.8
MSTRG.27501 Avicennia marina HOM05D003445 ORTHO05D004114 7.5e-25 117.5 90 65.6
Cfa001777 Carpinus fangiana HOM05D003445 ORTHO05D004114 2.9e-24 115.5 98 60.2
Haze_16775 Corylus avellana HOM05D003445 ORTHO05D004114 2.9e-24 115.5 98 60.2
MSTRG.8120 Avicennia marina HOM05D003445 ORTHO05D004114 3.7e-24 115.2 90 70.0
Hund22304 Selenicereus undatus HOM05D003445 ORTHO05D004114 3.7e-24 115.2 98 64.3
QL08p053096 Quercus lobata HOM05D003445 ORTHO05D004114 4.9e-24 114.8 98 61.2
Eucgr.G02737 Eucalyptus grandis HOM05D003445 ORTHO05D004114 6.4e-24 114.4 98 60.2
Lj3C935G7 Lonicera japonica HOM05D003445 ORTHO05D004114 6.4e-24 114.4 103 61.2
Oeu060276.1 Olea europaea HOM05D003445 ORTHO05D004114 6.4e-24 114.4 92 66.3
GSVIVG01016165001 Vitis vinifera HOM05D003445 ORTHO05D004114 6.4e-24 114.4 100 61.0
Atru.chr12.903 Acer truncatum HOM05D003445 ORTHO05D004114 8.3e-24 114.0 96 60.4
Prupe.2G093900 Prunus persica HOM05D003445 ORTHO05D004114 8.3e-24 114.0 96 62.5
MD02G1241800 Malus domestica HOM05D003445 ORTHO05D004114 1.1e-23 113.6 98 61.2
Gohir.A06G168900 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.4e-23 113.2 96 61.5
Gohir.D06G176400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 1.4e-23 113.2 96 61.5
Gorai.010G207600 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.4e-23 113.2 96 61.5
COL.COLO4_02905 Corchorus olitorius HOM05D003445 ORTHO05D004114 1.9e-23 112.8 98 61.2
Hma1.2p1_1009F.1_g247280 Hydrangea macrophylla HOM05D003445 ORTHO05D004114 1.9e-23 112.8 92 64.1
Oeu060277.5 Olea europaea HOM05D003445 ORTHO05D004114 1.9e-23 112.8 92 65.2
Thecc.10G089500 Theobroma cacao HOM05D003445 ORTHO05D004114 1.9e-23 112.8 98 61.2
TAR369G0057 Trochodendron aralioides HOM05D003445 ORTHO05D004114 3.2e-23 112.1 98 61.2
EL10As9g23938 Beta vulgaris HOM05D003445 ORTHO05D004114 4.1e-23 111.7 96 62.5
AUR62041269 Chenopodium quinoa HOM05D003445 ORTHO05D004114 4.1e-23 111.7 96 63.5
AUR62041795 Chenopodium quinoa HOM05D003445 ORTHO05D004114 4.1e-23 111.7 96 63.5
Gorai.009G308500 Gossypium raimondii HOM05D003445 ORTHO05D004114 4.1e-23 111.7 98 58.2
Nn6g35202 Nelumbo nucifera HOM05D003445 ORTHO05D004114 4.1e-23 111.7 98 59.2
TAR623G1080 Trochodendron aralioides HOM05D003445 ORTHO05D004114 4.1e-23 111.7 98 59.2
CANSAT56G2777 Cannabis sativa HOM05D003445 ORTHO05D004114 5.4e-23 111.3 98 61.2
Gohir.A10G200400 Gossypium hirsutum HOM05D003445 ORTHO05D004114 5.4e-23 111.3 97 60.8
Sc09g0005840 Simmondsia chinensis HOM05D003445 ORTHO05D004114 7.0e-23 110.9 92 63.0
Gorai.011G234000 Gossypium raimondii HOM05D003445 ORTHO05D004114 1.2e-22 110.2 98 60.2
unitig_736.g22325 Utricularia gibba HOM05D003445 ORTHO05D004114 1.2e-22 110.2 94 60.6
Dinv36360 Davidia involucrata HOM05D003445 ORTHO05D004114 2.0e-22 109.4 97 57.7
Gohir.D10G208300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 2.0e-22 109.4 98 60.2
Phvul.007G141100 Phaseolus vulgaris HOM05D003445 ORTHO05D004114 2.0e-22 109.4 98 57.1
CSS0030750 Camellia sinensis var. sinensis HOM05D003445 ORTHO05D004114 2.7e-22 109.0 97 57.7
TAR633G1158 Trochodendron aralioides HOM05D003445 ORTHO05D004114 2.7e-22 109.0 98 58.2
Duzib114G0852 Durio zibethinus HOM05D003445 ORTHO05D004114 3.5e-22 108.6 96 60.4
Nitab4.5_0004047g0030 Nicotiana tabacum HOM05D003445 ORTHO05D004114 3.5e-22 108.6 64 85.9
unitig_899.g15058 Utricularia gibba HOM05D003445 ORTHO05D004114 3.5e-22 108.6 87 65.5
Carub.0006s0337 Capsella rubella HOM05D003445 ORTHO05D004114 4.6e-22 108.2 98 56.1
FAN10G3468 Fragaria x ananassa HOM05D003445 ORTHO05D004114 4.6e-22 108.2 100 57.0
THA.LOC104816445 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 4.6e-22 108.2 98 57.1
Actinidia38891 Actinidia chinensis HOM05D003445 ORTHO05D004114 6.0e-22 107.8 100 56.0
Cpa.g.sc53.166 Carica papaya HOM05D003445 ORTHO05D004114 6.0e-22 107.8 96 60.4
ECA233G3917 Erigeron canadensis HOM05D003445 ORTHO05D004114 6.0e-22 107.8 82 68.3
Gohir.D05G292300 Gossypium hirsutum HOM05D003445 ORTHO05D004114 6.0e-22 107.8 96 58.3
MD07G1074100 Malus domestica HOM05D003445 ORTHO05D004114 6.0e-22 107.8 96 61.5
PGR142G3968 Punica granatum HOM05D003445 ORTHO05D004114 6.0e-22 107.8 97 58.8
THA.LOC104823197 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 6.0e-22 107.8 98 55.1
Lsat_1_v5_gn_8_17860 Lactuca sativa HOM05D003445 ORTHO05D004114 7.8e-22 107.5 85 64.7
Psat6g173360 Pisum sativum HOM05D003445 ORTHO05D004114 7.8e-22 107.5 98 56.1
FAN03G1234 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.0e-21 107.1 102 53.9
HanXRQChr08g0218311 Helianthus annuus HOM05D003445 ORTHO05D004114 1.0e-21 107.1 82 67.1
Medtr1g090773 Medicago truncatula HOM05D003445 ORTHO05D004114 1.3e-21 106.7 98 57.1
FAN01G0566 Fragaria x ananassa HOM05D003445 ORTHO05D004114 1.7e-21 106.3 102 54.9
Manes.11G087166 Manihot esculenta HOM05D003445 ORTHO05D004114 1.7e-21 106.3 96 58.3
AT5G04430 Arabidopsis thaliana HOM05D003445 ORTHO05D004114 2.3e-21 105.9 97 55.7
MELO3C012385.2 Cucumis melo HOM05D003445 ORTHO05D004114 2.3e-21 105.9 89 61.8
FAN06G2771 Fragaria x ananassa HOM05D003445 ORTHO05D004114 3.0e-21 105.5 102 54.9
Gohir.A05G291200 Gossypium hirsutum HOM05D003445 ORTHO05D004114 3.0e-21 105.5 96 57.3
Actinidia34789 Actinidia chinensis HOM05D003445 ORTHO05D004114 3.9e-21 105.1 92 57.6
Aqoxy1G01069 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 57.1
AL6G14070 Arabidopsis lyrata HOM05D003445 ORTHO05D004114 3.9e-21 105.1 97 55.7
BcaB01g05898 Brassica carinata HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 56.1
A03p01680 Brassica napus HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 56.1
C02p01930 Brassica napus HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 54.1
C03p02050 Brassica napus HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 56.1
BolC2t06150H Brassica oleracea HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 54.1
BolC3t12758H Brassica oleracea HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 56.1
BraA03t09543Z Brassica rapa HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 56.1
Duzib128G1656 Durio zibethinus HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 56.1
Glyma.20G191700 Glycine max HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 55.1
Nn3g19092 Nelumbo nucifera HOM05D003445 ORTHO05D004114 3.9e-21 105.1 79 67.1
VMungo0720G0843 Vigna mungo HOM05D003445 ORTHO05D004114 3.9e-21 105.1 98 54.1
Ca_10454_v3 Cicer arietinum L. HOM05D003445 ORTHO05D004114 5.0e-21 104.8 98 53.1
Rhsim09G0145400 Rhododendron simsii HOM05D003445 ORTHO05D004114 5.0e-21 104.8 92 59.8
HPP92_020767 Vanilla planifolia HOM05D003445 ORTHO05D004114 5.0e-21 104.8 98 55.1
BcaB05g21762 Brassica carinata HOM05D003445 ORTHO05D004114 6.6e-21 104.4 98 53.1
CsaV3_5G035820 Cucumis sativus L. HOM05D003445 ORTHO05D004114 6.6e-21 104.4 86 62.8
Potri.008G030700 Populus trichocarpa HOM05D003445 ORTHO05D004114 6.6e-21 104.4 98 57.1
Zm00001eb259230 Zea mays HOM05D003445 ORTHO05D004114 6.6e-21 104.4 85 64.7
arahy.Tifrunner.gnm1.ann1.2WVS1U Arachis hypogaea HOM05D003445 ORTHO05D004114 8.6e-21 104.0 98 56.1
arahy.Tifrunner.gnm1.ann1.68AZQV Arachis hypogaea HOM05D003445 ORTHO05D004114 8.6e-21 104.0 98 56.1
Glyma.10G198300 Glycine max HOM05D003445 ORTHO05D004114 8.6e-21 104.0 98 55.1
Lj5g0011720 Lotus japonicus HOM05D003445 ORTHO05D004114 1.1e-20 103.6 98 53.1
vmacro10262 Vaccinium macrocarpon HOM05D003445 ORTHO05D004114 1.1e-20 103.6 99 58.6
Sabra08G0020500 Salix brachista HOM05D003445 ORTHO05D004114 1.5e-20 103.2 98 55.1
PSO339G4614 Papaver somniferum HOM05D003445 ORTHO05D004114 1.9e-20 102.8 89 58.4
RcHm_v2.0_Chr1g0335271 Rosa chinensis HOM05D003445 ORTHO05D004114 1.9e-20 102.8 98 56.1
Sabra10G0178800 Salix brachista HOM05D003445 ORTHO05D004114 1.9e-20 102.8 98 55.1
Zm00001eb191030 Zea mays HOM05D003445 ORTHO05D004114 1.9e-20 102.8 85 63.5
ATR0043G023 Amborella trichopoda HOM05D003445 ORTHO05D004114 2.5e-20 102.4 110 53.6
DCAR_019061 Daucus carota HOM05D003445 ORTHO05D004114 2.5e-20 102.4 92 59.8
Aa31LG11G5300 Aethionema arabicum HOM05D003445 ORTHO05D004114 3.3e-20 102.1 98 52.0
MD02G1237900 Malus domestica HOM05D003445 ORTHO05D004114 3.3e-20 102.1 92 58.7
CiPaw.02G170100 Carya illinoinensis HOM05D003445 ORTHO05D004114 4.3e-20 101.7 86 59.3
Sed0007053 Sechium edule HOM05D003445 ORTHO05D004114 4.3e-20 101.7 82 64.6
BcaC06g32151 Brassica carinata HOM05D003445 ORTHO05D004114 5.6e-20 101.3 97 54.6
Lsat_1_v5_gn_2_103201 Lactuca sativa HOM05D003445 ORTHO05D004114 5.6e-20 101.3 85 61.2
Sp6g38310 Schrenkiella parvula HOM05D003445 ORTHO05D004114 5.6e-20 101.3 96 54.2
TPR.G37741 Trifolium pratense HOM05D003445 ORTHO05D004114 5.6e-20 101.3 98 56.1
BcaC03g12945 Brassica carinata HOM05D003445 ORTHO05D004114 7.3e-20 100.9 96 53.1
CARHR208830 Cardamine hirsuta HOM05D003445 ORTHO05D004114 7.3e-20 100.9 87 57.5
PSO801G0704 Papaver somniferum HOM05D003445 ORTHO05D004114 7.3e-20 100.9 89 57.3
Thhalv10014068m.g Eutrema salsugineum HOM05D003445 ORTHO05D004114 9.5e-20 100.5 96 54.2
Potri.010G230500 Populus trichocarpa HOM05D003445 ORTHO05D004114 9.5e-20 100.5 96 55.2
Sed0013139 Sechium edule HOM05D003445 ORTHO05D004114 9.5e-20 100.5 73 65.8
Lalb_Chr02g0151111 Lupinus albus HOM05D003445 ORTHO05D004114 1.2e-19 100.1 97 52.6
THA.LOC104826969 Tarenaya hassleriana HOM05D003445 ORTHO05D004114 1.2e-19 100.1 96 55.2
Aqoxy2G01633 Aquilegia oxysepala HOM05D003445 ORTHO05D004114 1.6e-19 99.8 104 52.9
A10p31650 Brassica napus HOM05D003445 ORTHO05D004114 1.6e-19 99.8 99 52.5
BolC9t59976H Brassica oleracea HOM05D003445 ORTHO05D004114 1.6e-19 99.8 99 52.5
BraA02t04812Z Brassica rapa HOM05D003445 ORTHO05D004114 1.6e-19 99.8 92 54.3
BraA10t45211Z Brassica rapa HOM05D003445 ORTHO05D004114 1.6e-19 99.8 99 52.5
Ciclev10032050m.g Citrus clementina HOM05D003445 ORTHO05D004114 2.1e-19 99.4 82 62.2
Lalb_Chr06g0170031 Lupinus albus HOM05D003445 ORTHO05D004114 3.6e-19 98.6 98 52.0
TWI63G1099 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 3.6e-19 98.6 97 55.7
TWI38G0253 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 6.2e-19 97.8 83 59.0
CiPaw.01G265300 Carya illinoinensis HOM05D003445 ORTHO05D004114 8.0e-19 97.4 86 58.1
PSO063G2817 Papaver somniferum HOM05D003445 ORTHO05D004114 1.1e-18 97.1 96 57.3
Dinv31260 Davidia involucrata HOM05D003445 ORTHO05D004114 1.4e-18 96.7 80 60.0
PSO339G2738 Papaver somniferum HOM05D003445 ORTHO05D004114 1.4e-18 96.7 98 56.1
Os02g0822300 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 1.8e-18 96.3 97 55.7
C09p72320 Brassica napus HOM05D003445 ORTHO05D004114 2.3e-18 95.9 97 52.6
Lalb_Chr01g0010281 Lupinus albus HOM05D003445 ORTHO05D004114 3.1e-18 95.5 78 60.3
CDE06G1707 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 5.2e-18 94.7 95 53.7
HPP92_014722 Vanilla planifolia HOM05D003445 ORTHO05D004114 5.2e-18 94.7 78 59.0
TWI15G0156 Tripterygium wilfordii HOM05D003445 ORTHO05D004114 8.9e-18 94.0 89 52.8
CDE03G0484 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 1.5e-17 93.2 95 52.6
BcaNung04621 Brassica carinata HOM05D003445 ORTHO05D004114 2.6e-17 92.4 59 72.9
HanXRQChr14g0456171 Helianthus annuus HOM05D003445 ORTHO05D004114 2.6e-17 92.4 88 53.4
FvH4_7g06600 Fragaria vesca HOM05D003445 ORTHO05D004114 4.4e-17 91.7 54 81.5
CDE08G1488 Ceratophyllum demersum HOM05D003445 ORTHO05D004114 1.3e-16 90.1 57 75.4
SGA_v2.0_scaffold62G21367 Striga asiatica HOM05D003445 ORTHO05D004114 1.3e-16 90.1 97 52.6
Nitab4.5_0009159g0020 Nicotiana tabacum HOM05D003445 ORTHO05D004114 4.9e-16 88.2 48 89.6
Oeu015056.1 Olea europaea HOM05D003445 ORTHO05D010382 1.4e-15 86.7 101 48.5
ClCG05G021420 Citrullus lanatus HOM05D003445 ORTHO05D004114 2.7e-14 82.4 105 46.7
BcaC05g29458 Brassica carinata HOM05D003445 ORTHO05D004114 3.5e-14 82.0 55 70.9
A05p38680 Brassica napus HOM05D003445 ORTHO05D004114 3.5e-14 82.0 55 70.9
C05p57550 Brassica napus HOM05D003445 ORTHO05D004114 3.5e-14 82.0 55 70.9
BolC5t34412H Brassica oleracea HOM05D003445 ORTHO05D004114 3.5e-14 82.0 55 70.9
BraA05t22659Z Brassica rapa HOM05D003445 ORTHO05D004114 3.5e-14 82.0 55 70.9
Sp3g08770 Schrenkiella parvula HOM05D003445 ORTHO05D004114 3.5e-14 82.0 73 60.3
BcaNung04928 Brassica carinata HOM05D003445 ORTHO05D004114 6.0e-14 81.3 55 70.9
Lalb_Chr19g0129371 Lupinus albus HOM05D003445 ORTHO05D004114 7.8e-14 80.9 72 55.6
DCAR_006384 Daucus carota HOM05D003445 ORTHO05D004114 5.1e-13 78.2 67 61.2
PRCOL_00000948 Prasinoderma coloniale HOM05D003445 ORTHO05D004114 1.9e-12 76.3 54 64.8
CBR_g30931 Chara braunii HOM05D003445 ORTHO05D004114 4.3e-12 75.1 54 61.1
SMO347G0528 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 4.3e-12 75.1 63 54.0
SEGI_38080 Sequoiadendron giganteum HOM05D003445 ORTHO05D004114 7.3e-12 74.3 54 61.1
BcaB05g22515 Brassica carinata HOM05D005757 ORTHO05D007090 1.2e-11 73.6 46 73.9
MCO01G249 Micromonas commoda HOM05D003445 ORTHO05D004114 2.3e-10 69.3 54 57.4
Mapoly0060s0047 Marchantia polymorpha HOM05D003445 ORTHO05D004114 8.9e-10 67.4 54 53.7
SMO340G0186 Selaginella moellendorffii HOM05D003445 ORTHO05D004114 1.5e-09 66.6 55 56.4
Os01g0533450 Oryza sativa ssp. japonica HOM05D003445 ORTHO05D004114 1.7e-08 63.2 75 49.3
SalBow6G0311 Salvia bowleyana HOM05D003445 ORTHO05D050775 1.6e-06 56.6 36 72.2


User provided reference genes

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