Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.2e-303 1045.0 853 100.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 7.2e-295 1017.3 853 98.5
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 5.7e-284 981.1 853 91.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.0e-244 849.7 706 79.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 2.9e-243 845.9 707 80.2
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 4.3e-215 752.3 760 81.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 9.0e-213 744.6 707 72.6
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.6e-198 697.2 691 66.7
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 6.7e-192 675.2 672 67.3
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.1e-189 666.4 699 65.4
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 6.9e-189 665.2 627 69.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.2e-185 654.4 695 68.2
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.0e-184 651.4 509 76.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 3.9e-184 649.4 714 63.0
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.3e-182 644.4 689 64.6
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.3e-182 644.4 702 66.0
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 5.3e-181 639.0 704 62.2
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 7.0e-181 638.6 630 64.9
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.6e-180 636.7 698 59.9
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 3.5e-180 636.3 631 62.4
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 8.5e-179 631.7 690 62.0
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 8.5e-179 631.7 725 62.1
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.5e-178 630.9 684 64.0
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.9e-178 630.6 694 63.3
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 7.2e-178 628.6 500 72.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 9.4e-178 628.2 690 63.5
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 9.4e-178 628.2 615 65.9
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.2e-177 627.9 719 60.9
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.2e-177 627.9 546 68.3
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.6e-177 627.5 698 63.0
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.1e-177 627.1 629 67.2
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 2.7e-177 626.7 499 72.7
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 4.7e-177 625.9 492 76.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 8.0e-177 625.2 683 63.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 8.0e-177 625.2 639 64.5
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.3e-176 623.6 707 63.1
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.7e-176 622.1 669 63.2
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.2e-175 621.3 691 62.4
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.5e-175 620.9 678 60.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.0e-175 620.5 639 63.8
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 4.4e-175 619.4 623 66.1
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.3e-174 617.8 643 63.9
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.2e-174 617.1 691 60.8
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 4.8e-174 615.9 691 67.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 4.8e-174 615.9 694 60.2
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.1e-173 612.8 666 64.1
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 9.1e-173 611.7 683 62.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.2e-172 611.3 624 63.9
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.2e-172 611.3 711 60.1
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.2e-172 611.3 705 63.1
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.2e-172 611.3 515 69.1
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 3.5e-172 609.8 684 61.3
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.7e-172 608.6 627 69.7
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.5e-171 605.5 671 61.0
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.5e-170 604.4 689 64.2
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.5e-170 603.6 692 63.9
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.2e-170 603.2 689 64.2
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-169 601.3 689 64.0
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.2e-169 601.3 713 61.4
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 2.7e-169 600.1 640 65.0
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.0e-168 598.2 647 62.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.0e-168 598.2 502 70.3
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 8.8e-168 595.1 687 63.5
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 1.2e-167 594.7 512 67.8
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 4.1e-165 586.3 508 63.0
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 5.4e-165 585.9 498 69.1
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 9.1e-165 585.1 502 70.1
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 9.1e-165 585.1 502 69.9
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.0e-163 581.6 507 68.6
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 8.6e-163 578.6 709 61.6
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 8.6e-163 578.6 625 63.7
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.5e-162 577.0 548 65.3
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 4.2e-162 576.2 625 62.9
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.2e-161 574.7 546 64.8
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.1e-161 573.9 508 69.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 3.0e-160 570.1 616 64.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.5e-159 567.8 540 62.6
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.6e-159 567.0 508 69.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 8.3e-158 562.0 688 58.1
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.4e-157 561.2 540 63.7
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.0e-156 557.4 675 59.7
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.0e-155 555.1 639 57.1
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.8e-153 547.0 619 60.1
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 4.7e-153 546.2 503 61.4
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 6.1e-153 545.8 542 59.8
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.0e-152 545.0 694 57.8
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 1.4e-152 544.7 503 62.4
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 6.8e-152 542.3 621 63.1
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 6.8e-152 542.3 711 57.7
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.7e-150 537.7 693 58.0
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 2.2e-150 537.3 628 56.8
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.2e-150 537.3 513 64.7
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 3.7e-150 536.6 620 59.4
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 3.7e-150 536.6 620 59.4
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.3e-150 535.4 622 59.5
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.1e-149 535.0 620 59.2
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 6.6e-147 525.8 517 66.9
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 8.6e-147 525.4 517 66.7
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.5e-140 503.4 691 54.3
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.7e-134 484.6 681 55.2
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.5e-114 418.3 559 55.5
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 7.3e-114 416.0 509 55.4
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.8e-112 411.4 505 53.7
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.2e-111 408.7 487 61.8
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 7.9e-108 396.0 520 59.0
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.1e-105 387.9 306 69.3
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.0e-99 367.5 326 66.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.1e-85 322.4 213 75.6
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.2e-84 318.9 494 47.4
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 9.7e-82 309.3 539 41.6
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 9.7e-74 282.7 485 45.8
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.7e-73 280.8 373 60.6
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.2e-71 275.8 485 44.9
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 6.1e-68 263.5 442 43.2
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.8e-67 261.9 293 65.5
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 2.0e-66 258.5 339 62.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 3.7e-65 254.2 295 55.6
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 5.3e-64 250.4 187 68.4
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 9.7e-58 229.6 292 47.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.7e-57 228.8 276 58.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 6.3e-57 226.9 188 70.7
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.0e-55 221.9 201 61.7
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 8.1e-20 103.6 88 54.5
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-19 101.7 85 58.8
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 5.2e-19 100.9 58 77.6
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.5e-18 99.4 152 47.4
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 4.9e-17 94.4 343 27.1
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 8.3e-17 93.6 367 31.1
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 3.2e-16 91.7 104 53.8
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.1e-15 89.0 82 74.4
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-15 88.2 101 53.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 3.5e-15 88.2 69 62.3
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 4.3e-13 81.3 104 51.0
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 1.1e-11 76.6 261 31.8
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 5.8e-10 70.9 78 71.8
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 1.7e-06 59.3 118 49.2
Lalb_Chr11g0067351 Lupinus albus HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 36.6
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 1.7e-06 59.3 93 37.6
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 2.3e-06 58.9 43 72.1
Lalb_Chr11g0067341 Lupinus albus HOM05D001023 ORTHO05D000912 3.0e-06 58.5 97 36.1
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 3.9e-06 58.2 103 36.9
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 3.9e-06 58.2 103 36.9
Glyma.06G135300 Glycine max HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 36.6
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 101 35.6
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 88 35.2
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.9e-06 58.2 88 35.2
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 3.9e-06 58.2 101 35.6
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 3.9e-06 58.2 88 35.2
Medtr3g092510 Medicago truncatula HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 35.5
Phvul.009G046100 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 3.9e-06 58.2 93 36.6
EL10Ac4g08496 Beta vulgaris HOM05D001023 ORTHO05D000912 5.1e-06 57.8 90 35.6
Glyma.04G229400 Glycine max HOM05D001023 ORTHO05D000912 5.1e-06 57.8 93 35.5
Ah.04g163800 Amaranthus hybridus HOM05D001023 ORTHO05D000912 6.6e-06 57.4 90 37.8
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 35.5
AUR62043090 Chenopodium quinoa HOM05D001023 ORTHO05D000912 8.7e-06 57.0 90 35.6
Ca_16768_v3 Cicer arietinum L. HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 35.5
RcHm_v2.0_Chr7g0210041 Rosa chinensis HOM05D000142 ORTHO05D003173 8.7e-06 57.0 98 37.8
Sc03g0007750 Simmondsia chinensis HOM05D001023 ORTHO05D000912 8.7e-06 57.0 95 34.7
VMungo1309G1740 Vigna mungo HOM05D001023 ORTHO05D000912 8.7e-06 57.0 93 35.5


User provided reference genes

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