Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 0.0e+00 1279.2 649 100.0
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 0.0e+00 1204.5 623 97.8
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 0.0e+00 1104.0 622 89.7
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 3.1e-255 885.2 649 72.4
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 1.9e-233 812.8 645 67.9
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.6e-187 659.1 645 59.5
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.3e-149 533.5 632 52.5
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.7e-83 313.5 691 35.3
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 1.8e-77 294.7 644 35.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.6e-73 281.6 660 34.8
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 2.0e-73 281.2 680 32.9
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.5e-71 275.0 662 35.2
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 3.3e-71 273.9 724 31.2
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.8e-66 258.1 697 32.0
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 5.4e-66 256.5 681 32.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.0e-65 254.6 696 33.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.3e-64 251.9 716 30.4
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 7.3e-63 246.1 662 31.7
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 3.6e-62 243.8 688 33.7
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 4.7e-62 243.4 684 32.2
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.2e-61 240.0 662 30.1
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 8.9e-61 239.2 648 31.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 2.0e-60 238.0 702 31.9
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 7.5e-60 236.1 662 31.0
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 7.5e-60 236.1 647 33.8
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 1.7e-59 235.0 703 30.6
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.7e-59 235.0 693 31.6
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 6.4e-59 233.0 669 29.4
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.1e-58 232.3 686 30.6
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 7.8e-57 226.1 645 29.9
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.1e-54 218.0 644 30.7
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 3.6e-54 217.2 679 30.6
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 8.1e-54 216.1 701 30.2
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.8e-53 214.9 631 31.4
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.1e-53 214.2 628 29.5
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 2.6e-52 211.1 614 30.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 4.9e-51 206.8 649 30.8
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.1e-50 205.7 557 31.2
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.6e-49 201.8 554 31.6
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 4.6e-49 200.3 647 29.8
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.3e-48 198.7 622 30.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.1e-47 195.7 679 29.7
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 5.6e-47 193.4 650 29.8
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 4.7e-46 190.3 664 29.2
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.4e-45 188.7 688 27.3
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 4.0e-45 187.2 703 30.0
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 5.2e-45 186.8 614 28.8
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 8.9e-45 186.0 671 28.9
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 7.6e-44 183.0 658 29.2
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 9.9e-44 182.6 672 28.1
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 9.9e-44 182.6 658 28.3
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.3e-43 182.2 642 29.9
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 2.9e-43 181.0 643 30.2
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 4.9e-43 180.3 672 27.4
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 8.4e-43 179.5 643 29.9
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 8.4e-43 179.5 659 29.1
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.1e-42 179.1 690 27.5
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 1.1e-42 179.1 667 28.5
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 9.2e-42 176.0 623 30.0
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 2.7e-41 174.5 753 26.4
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 7.8e-41 172.9 501 30.1
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 7.8e-41 172.9 646 31.4
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 2.3e-40 171.4 684 27.6
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 2.5e-39 167.9 674 26.1
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 4.3e-39 167.2 618 30.3
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 5.6e-39 166.8 617 30.0
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.4e-37 161.4 673 26.0
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.4e-37 161.4 616 29.1
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.9e-37 159.8 626 29.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 2.0e-36 158.3 625 28.6
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 5.8e-36 156.8 525 28.6
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 7.6e-36 156.4 648 28.5
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.3e-35 155.6 679 26.8
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.3e-35 155.6 495 31.7
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.8e-35 154.1 667 27.1
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 4.9e-35 153.7 642 26.6
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.4e-34 151.4 579 28.8
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 5.4e-34 150.2 392 31.6
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.6e-33 148.7 598 29.8
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 4.6e-33 147.1 639 28.8
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 6.0e-33 146.7 633 27.2
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.3e-31 139.8 358 31.0
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 7.3e-31 139.8 644 28.0
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 2.8e-30 137.9 720 27.2
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.4e-29 135.6 580 29.1
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.2e-28 132.5 572 28.8
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 7.6e-28 129.8 586 26.8
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.8e-27 127.5 640 28.9
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 5.4e-26 123.6 640 24.7
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.2e-25 122.5 617 25.9
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 5.1e-24 117.1 469 30.5
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.1e-23 115.9 422 29.4
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.5e-23 115.5 620 25.2
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 3.3e-23 114.4 563 27.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 5.6e-23 113.6 583 27.3
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 2.1e-22 111.7 600 25.8
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 2.8e-22 111.3 402 30.6
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 4.8e-22 110.5 563 27.7
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 2.4e-21 108.2 641 24.8
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 2.2e-19 101.7 296 34.5
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 2.2e-19 101.7 296 34.5
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 2.2e-19 101.7 296 34.5
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.2e-19 101.7 572 23.8
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 9.3e-18 96.3 473 26.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 5.1e-16 90.5 604 25.3
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.5e-15 89.0 149 42.3
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 2.8e-14 84.7 138 37.7
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 8.2e-14 83.2 487 25.9
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-13 82.4 482 22.8
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.1e-13 81.3 102 53.9
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 4.0e-13 80.9 269 28.6
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 5.8e-12 77.0 166 33.1
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.8e-11 74.3 397 25.7
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.1e-10 72.8 199 34.2
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 3.2e-10 71.2 107 41.1
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 7.1e-10 70.1 475 24.2
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 2.3e-08 65.1 409 23.7
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 8.7e-08 63.2 175 29.1
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.5e-07 62.4 61 45.9
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 2.5e-07 61.6 61 45.9
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 2.5e-07 61.6 207 29.5
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 3.3e-07 61.2 71 46.5
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-06 59.3 70 42.9
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.1e-06 58.5 179 31.3


User provided reference genes

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