Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.5e-49 197.2 93 100.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.5e-38 162.5 82 95.1
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.0e-34 147.5 79 88.6
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.3e-33 144.4 79 87.3
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-32 142.9 79 89.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.7e-32 141.0 79 87.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.6e-30 135.2 79 82.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 5.2e-23 110.9 76 67.1
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.2e-23 110.9 76 63.2
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 8.9e-23 110.2 73 69.9
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.5e-22 109.4 72 68.1
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.6e-22 108.6 72 68.1
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 3.4e-22 108.2 76 64.5
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.4e-22 107.8 68 69.1
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-22 107.8 72 66.7
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-22 107.8 72 66.7
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.8e-22 107.5 73 67.1
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.3e-21 106.3 75 62.7
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.7e-21 105.9 73 65.8
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.7e-21 105.9 73 65.8
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.9e-21 105.1 68 67.6
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.4e-21 104.0 73 64.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 6.4e-21 104.0 73 61.6
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 6.4e-21 104.0 75 60.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.1e-20 103.2 76 59.2
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.1e-20 103.2 73 63.0
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.4e-20 102.8 73 65.8
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.4e-20 102.8 76 57.9
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-20 102.4 78 59.0
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.9e-20 102.4 78 59.0
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.9e-20 102.4 73 61.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.9e-20 102.4 73 61.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.4e-20 102.1 78 57.7
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.4e-20 102.1 76 56.6
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.4e-20 102.1 76 56.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.4e-20 102.1 73 63.0
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.2e-20 101.7 73 61.6
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 3.2e-20 101.7 73 63.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.2e-20 101.7 75 61.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.2e-20 101.7 73 67.1
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 3.2e-20 101.7 76 57.9
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 4.1e-20 101.3 78 57.7
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.1e-20 101.3 76 59.2
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 4.1e-20 101.3 73 61.6
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.1e-20 101.3 73 61.6
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.1e-20 101.3 74 60.8
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.4e-20 100.9 73 60.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 5.4e-20 100.9 76 59.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 5.4e-20 100.9 73 60.3
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 5.4e-20 100.9 73 60.3
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.4e-20 100.9 72 59.7
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 5.4e-20 100.9 76 56.6
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 5.4e-20 100.9 76 60.5
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 7.1e-20 100.5 73 63.0
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 7.1e-20 100.5 75 61.3
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.1e-20 100.5 62 75.8
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 7.1e-20 100.5 76 57.9
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 7.1e-20 100.5 75 61.3
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 9.2e-20 100.1 76 56.6
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 9.2e-20 100.1 76 60.5
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 9.2e-20 100.1 76 59.2
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.2e-19 99.8 73 60.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.2e-19 99.8 73 60.3
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.2e-19 99.8 77 57.1
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-19 99.8 72 58.3
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.6e-19 99.4 73 60.3
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.6e-19 99.4 73 64.4
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-19 99.4 72 59.7
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.1e-19 99.0 73 58.9
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.1e-19 99.0 73 61.6
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-19 99.0 73 60.3
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-19 99.0 72 61.1
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.1e-19 99.0 75 57.3
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.7e-19 98.6 75 54.7
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 2.7e-19 98.6 75 60.0
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.5e-19 98.2 73 58.9
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.5e-19 98.2 73 58.9
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.5e-19 98.2 73 58.9
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.5e-19 98.2 73 60.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 3.5e-19 98.2 76 53.9
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 4.6e-19 97.8 73 58.9
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 4.6e-19 97.8 75 57.3
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 4.6e-19 97.8 76 52.6
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 4.6e-19 97.8 76 52.6
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.6e-19 97.8 73 60.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 6.0e-19 97.4 73 58.9
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 6.0e-19 97.4 76 56.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 7.8e-19 97.1 76 55.3
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 7.8e-19 97.1 75 58.7
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.0e-18 96.7 73 57.5
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 1.3e-18 96.3 73 57.5
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-18 96.3 75 57.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-18 96.3 76 56.6
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.3e-18 96.3 75 58.7
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.7e-18 95.9 73 57.5
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.7e-18 95.9 76 57.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.3e-18 95.5 73 56.2
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 3.0e-18 95.1 76 55.3
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.0e-18 95.1 75 54.7
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 3.0e-18 95.1 76 56.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 3.9e-18 94.7 73 57.5
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 5.1e-18 94.4 73 56.2
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 5.1e-18 94.4 76 56.6
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.6e-18 94.0 69 60.9
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.6e-18 93.6 78 56.4
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.6e-18 93.6 78 56.4
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.6e-18 93.6 75 53.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 8.6e-18 93.6 75 56.0
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 8.6e-18 93.6 73 56.2
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.1e-17 93.2 76 55.3
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.1e-17 93.2 73 54.8
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.5e-17 92.8 73 53.4
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.5e-17 92.8 73 54.8
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.9e-17 92.4 73 57.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 2.5e-17 92.0 73 56.2
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 4.3e-17 91.3 73 54.8
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 4.3e-17 91.3 76 51.3
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.3e-17 91.3 78 53.8
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 5.6e-17 90.9 73 53.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 5.6e-17 90.9 73 53.4
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 7.3e-17 90.5 73 53.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 7.3e-17 90.5 73 53.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 7.3e-17 90.5 73 53.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 7.3e-17 90.5 73 53.4
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 7.3e-17 90.5 76 52.6
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.3e-17 90.5 76 51.3
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 9.6e-17 90.1 76 52.6
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.6e-16 89.4 73 54.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.1e-16 89.0 73 53.4
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.1e-16 89.0 68 57.4
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 4.7e-16 87.8 73 54.8
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.7e-16 87.8 73 56.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.2e-16 87.4 73 53.4
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.4e-15 86.3 79 51.9
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 5.2e-15 84.3 76 50.0
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 6.8e-15 84.0 73 50.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.2e-14 83.2 76 51.3
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.0e-14 82.4 73 50.7
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 3.4e-14 81.6 75 49.3
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 3.4e-14 81.6 75 46.7
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.4e-14 81.6 77 51.9
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-13 79.7 62 56.5
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.2e-13 79.0 76 50.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.8e-13 78.2 68 57.4
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.9e-13 77.8 67 50.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.4e-13 77.4 67 50.7
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 6.4e-13 77.4 68 48.5
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.4e-13 77.4 46 76.1
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 8.4e-13 77.0 62 53.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 1.4e-12 76.3 67 50.7
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.4e-12 75.5 67 49.3
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 3.2e-12 75.1 67 44.8
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 2.7e-11 72.0 72 44.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.0e-10 70.1 50 60.0
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 3.0e-10 68.6 66 45.5
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.1e-10 67.8 67 43.3
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.9e-09 65.9 70 44.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.9e-09 65.9 67 41.8
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.3e-09 63.9 67 43.3
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-08 63.2 67 44.8
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-08 63.2 67 44.8
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.6e-08 61.6 68 38.2
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.2e-06 56.6 67 40.3


User provided reference genes

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