Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.4e-50 202.6 97 100.0
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.8e-46 186.8 93 94.6
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-44 183.0 96 91.7
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.6e-44 179.9 96 89.6
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 9.0e-42 173.3 92 91.3
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.7e-40 169.1 96 84.4
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 4.5e-33 144.4 96 65.6
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.9e-33 143.3 79 89.9
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.9e-33 143.3 96 64.6
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.9e-33 143.3 96 64.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.4e-32 140.6 96 66.7
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.4e-32 140.6 96 64.6
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.4e-32 140.6 96 64.6
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.2e-31 138.3 96 64.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.4e-31 137.5 96 63.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 9.3e-31 136.7 96 64.6
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.1e-30 135.6 96 65.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.1e-30 135.6 96 61.5
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 6.0e-30 134.0 96 64.6
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.3e-29 132.9 96 61.5
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.3e-29 132.9 96 63.5
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.0e-29 131.7 96 63.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 5.1e-29 131.0 95 58.9
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.1e-29 131.0 96 57.3
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 6.7e-29 130.6 96 62.5
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.5e-28 129.4 96 58.3
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.5e-28 128.6 96 61.5
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.3e-28 128.3 96 60.4
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.3e-28 127.9 96 57.3
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 4.3e-28 127.9 96 57.3
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 5.6e-28 127.5 96 59.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 9.6e-28 126.7 96 59.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 9.6e-28 126.7 96 58.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 9.6e-28 126.7 96 58.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 9.6e-28 126.7 96 58.3
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.3e-27 126.3 96 57.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.3e-27 126.3 96 59.4
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.6e-27 125.9 95 60.0
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.6e-27 125.9 96 57.3
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.1e-27 125.6 96 58.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 2.1e-27 125.6 96 56.2
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 2.1e-27 125.6 96 56.2
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 2.1e-27 125.6 95 54.7
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.1e-27 125.6 96 58.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-27 125.6 96 58.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.8e-27 125.2 96 59.4
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.7e-27 124.8 96 58.3
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.7e-27 124.8 96 60.4
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.7e-27 124.8 96 59.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.8e-27 124.4 96 58.3
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 4.8e-27 124.4 96 57.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 6.2e-27 124.0 96 58.3
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 6.2e-27 124.0 96 58.3
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.2e-27 124.0 96 60.4
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 6.2e-27 124.0 95 55.8
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 8.1e-27 123.6 96 56.2
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.1e-27 123.6 96 57.3
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 8.1e-27 123.6 95 56.8
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.1e-26 123.2 96 56.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.1e-26 123.2 96 55.2
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.1e-26 123.2 96 59.4
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.1e-26 123.2 96 58.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.4e-26 122.9 96 59.4
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.4e-26 122.9 96 54.2
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.4e-26 122.9 96 58.3
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.8e-26 122.5 96 59.4
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.8e-26 122.5 96 53.1
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.8e-26 122.5 96 53.1
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.8e-26 122.5 96 58.3
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.8e-26 122.5 96 57.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 2.4e-26 122.1 96 57.3
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 2.4e-26 122.1 96 57.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 2.4e-26 122.1 96 57.3
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-26 121.7 96 58.3
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 4.0e-26 121.3 96 58.3
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 4.0e-26 121.3 96 58.3
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 4.0e-26 121.3 96 58.3
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 4.0e-26 121.3 95 57.9
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 6.9e-26 120.6 96 56.2
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 6.9e-26 120.6 92 59.8
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.9e-26 120.6 96 56.2
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 6.9e-26 120.6 96 58.3
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 6.9e-26 120.6 96 58.3
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 9.0e-26 120.2 96 57.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.0e-26 120.2 96 55.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.5e-25 119.4 96 56.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.0e-25 119.0 96 56.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.6e-25 118.6 96 55.2
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.4e-25 118.2 96 54.2
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 3.4e-25 118.2 96 57.3
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 4.5e-25 117.9 96 56.2
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.5e-25 117.9 90 55.6
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 5.8e-25 117.5 96 56.2
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 7.6e-25 117.1 96 54.2
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 7.6e-25 117.1 96 55.2
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 7.6e-25 117.1 96 54.2
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 9.9e-25 116.7 96 55.2
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 9.9e-25 116.7 94 56.4
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.2e-24 115.5 96 54.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.2e-24 115.5 96 54.2
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.9e-24 115.2 96 57.3
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.9e-24 115.2 96 57.3
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.8e-24 114.8 96 55.2
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.9e-24 114.4 96 55.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.9e-24 114.4 96 53.1
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 6.4e-24 114.0 96 53.1
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 8.4e-24 113.6 95 54.7
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 8.4e-24 113.6 96 53.1
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 8.4e-24 113.6 96 58.3
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-23 112.8 95 54.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.4e-23 112.8 95 54.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.4e-23 112.8 95 54.7
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.4e-23 112.8 96 52.1
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.4e-23 112.8 96 54.2
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.9e-23 112.5 95 51.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-23 112.1 86 57.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.2e-23 111.7 96 52.1
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 5.5e-23 110.9 96 52.1
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 7.1e-23 110.5 96 53.1
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 9.3e-23 110.2 96 53.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 1.6e-22 109.4 96 50.0
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.6e-22 109.4 96 54.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.6e-22 109.4 96 52.1
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.1e-22 109.0 96 52.1
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.1e-22 109.0 96 52.1
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.1e-22 109.0 96 52.1
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 2.7e-22 108.6 95 52.6
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 2.7e-22 108.6 96 53.1
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 7.9e-22 107.1 96 50.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.9e-22 107.1 66 77.3
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-21 106.7 96 51.0
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.0e-21 106.7 96 51.0
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.0e-21 106.7 96 51.0
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.0e-21 106.7 96 51.0
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.0e-21 106.7 95 52.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.3e-21 106.3 96 52.1
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.0e-21 105.1 97 53.6
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 5.1e-21 104.4 96 51.0
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.9e-20 102.4 96 47.9
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 5.6e-20 100.9 97 50.5
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.8e-19 98.6 98 49.0
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.7e-19 98.2 97 50.5
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.1e-18 96.7 86 54.7
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.7e-16 89.4 68 55.9
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.2e-16 89.0 103 43.7
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.2e-16 89.0 95 45.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 3.8e-16 88.2 104 43.3
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 3.8e-16 88.2 95 44.2
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.8e-16 88.2 88 47.7
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.4e-16 87.0 95 42.1
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-15 86.3 50 80.0
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 7.1e-15 84.0 92 45.7
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-14 82.8 95 43.2
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 2.1e-14 82.4 99 41.4
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 4.6e-14 81.3 86 50.0
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 5.7e-12 74.3 95 38.9
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.8e-11 72.0 95 36.8
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 3.7e-11 71.6 95 40.0
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 3.7e-11 71.6 95 40.0
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 8.2e-11 70.5 88 40.9
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-10 70.1 77 44.2
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.1e-10 70.1 93 34.4
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 5.9e-09 64.3 96 38.5
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-08 63.2 95 35.8
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.2e-08 62.4 42 61.9
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 3.8e-08 61.6 53 50.9
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 9.3e-07 57.0 46 52.2


User provided reference genes

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