Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 2.6e-68 261.9 132 100.0
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.6e-17 93.2 154 40.3
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 2.1e-17 92.8 106 49.1
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.0e-16 90.5 146 39.0
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.5e-15 86.7 131 42.7
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 4.4e-15 85.1 131 42.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-14 83.6 132 37.9
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.3e-14 83.6 132 37.9
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.4e-13 80.1 73 58.9
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.8e-13 79.7 101 44.6
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.4e-13 79.3 130 36.9
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 4.1e-13 78.6 74 58.1
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.6e-12 76.6 98 43.9
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 2.9e-11 72.4 93 48.4
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 8.5e-11 70.9 92 44.6
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.5e-10 68.2 83 48.2
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.0e-08 63.9 81 45.7
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.0e-08 63.9 81 45.7
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.8e-08 63.2 93 41.9
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.3e-08 62.8 92 42.4
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 4.0e-08 62.0 81 44.4
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.2e-08 61.6 81 44.4
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 1.2e-07 60.5 81 43.2
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.2e-07 60.5 81 43.2
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.2e-07 60.5 81 43.2
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.5e-07 60.1 84 42.9
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-07 60.1 84 42.9
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-07 60.1 84 42.9
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-07 60.1 84 42.9
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-07 60.1 84 42.9
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.5e-07 60.1 81 43.2
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.5e-07 60.1 84 42.9
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 3.3e-07 58.9 81 42.0
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 4.4e-07 58.5 81 42.0
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.4e-07 58.5 84 41.7
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.4e-07 58.5 81 40.7
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 4.4e-07 58.5 81 43.2
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 5.7e-07 58.2 81 40.7
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 5.7e-07 58.2 81 42.0
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 7.5e-07 57.8 81 45.7
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 7.5e-07 57.8 81 44.4
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 7.5e-07 57.8 80 43.8
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 7.5e-07 57.8 84 41.7
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 9.7e-07 57.4 81 39.5
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.7e-07 57.4 81 43.2
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 9.7e-07 57.4 81 43.2
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 9.7e-07 57.4 80 42.5
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.3e-06 57.0 79 41.8
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 1.3e-06 57.0 79 41.8
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.3e-06 57.0 80 41.2
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 1.3e-06 57.0 80 41.2
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 1.3e-06 57.0 80 41.2
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 1.3e-06 57.0 80 41.2
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.3e-06 57.0 80 41.2
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 1.3e-06 57.0 81 42.0
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 1.3e-06 57.0 35 68.6
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.3e-06 57.0 81 43.2
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 1.7e-06 56.6 83 41.0
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.7e-06 56.6 79 41.8
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.7e-06 56.6 81 42.0
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.7e-06 56.6 81 42.0
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.7e-06 56.6 81 38.3
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 1.7e-06 56.6 79 41.8
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 2.2e-06 56.2 81 40.7
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.2e-06 56.2 92 39.1
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.8e-06 55.8 80 42.5
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.8e-06 55.8 79 41.8
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 2.8e-06 55.8 81 40.7
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.8e-06 55.8 81 40.7
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 2.8e-06 55.8 81 40.7
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.8e-06 55.8 79 41.8
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 2.8e-06 55.8 81 42.0
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 3.7e-06 55.5 79 40.5
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 3.7e-06 55.5 81 40.7
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 4.8e-06 55.1 81 40.7
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 4.8e-06 55.1 74 45.9
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 4.8e-06 55.1 81 40.7
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 6.3e-06 54.7 80 42.5
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 6.3e-06 54.7 81 38.3
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 8.2e-06 54.3 81 40.7
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 8.2e-06 54.3 81 42.0


User provided reference genes

Program Settings