Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 1.7e-188 662.5 341 100.0
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 8.8e-185 650.2 338 98.2
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 1.5e-176 622.9 338 95.6
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 1.2e-162 576.6 338 88.8
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 8.0e-162 573.9 342 87.7
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.8e-159 565.5 342 87.4
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 3.3e-155 552.0 339 84.7
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 5.1e-116 421.8 326 68.4
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 3.6e-114 415.6 346 64.5
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 6.2e-114 414.8 345 64.1
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 3.1e-113 412.5 347 64.3
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 3.1e-113 412.5 346 66.5
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.3e-111 407.1 345 64.3
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.9e-111 406.0 335 64.8
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 4.9e-111 405.2 345 62.9
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 7.1e-110 401.4 342 63.5
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 3.0e-108 396.0 351 60.1
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 5.6e-107 391.7 350 60.3
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 2.1e-106 389.8 343 60.6
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 4.8e-106 388.7 345 61.7
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 4.8e-106 388.7 353 60.3
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 6.2e-106 388.3 359 59.6
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 2.4e-105 386.3 346 59.2
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 6.9e-105 384.8 350 61.4
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 9.0e-105 384.4 351 61.0
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 1.2e-104 384.0 324 63.9
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 9.9e-104 380.9 344 61.3
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 1.3e-103 380.6 355 58.6
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.4e-102 377.1 348 59.5
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 3.2e-102 375.9 343 61.2
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 9.3e-102 374.4 342 57.3
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 2.1e-101 373.2 341 59.8
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 3.5e-101 372.5 342 58.2
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 6.0e-101 371.7 348 59.2
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 7.9e-101 371.3 343 57.7
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 3.9e-100 369.0 337 59.9
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 5.1e-100 368.6 295 64.7
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 5.1e-100 368.6 341 57.8
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 6.7e-100 368.2 350 58.0
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 8.7e-100 367.9 343 58.6
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.5e-99 367.1 340 59.7
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 2.5e-99 366.3 296 63.5
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 3.3e-99 365.9 347 58.8
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 4.3e-99 365.5 346 56.6
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 4.3e-99 365.5 346 57.5
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 5.6e-99 365.2 345 56.8
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 7.4e-99 364.8 341 58.1
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 9.6e-99 364.4 308 62.0
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 3.7e-98 362.5 343 56.9
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 3.7e-98 362.5 341 58.9
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 8.1e-98 361.3 339 58.7
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.1e-97 360.9 339 56.0
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 4.0e-97 359.0 340 58.5
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 6.9e-97 358.2 288 65.3
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 6.9e-97 358.2 346 55.8
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.5e-96 357.1 335 57.3
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 2.2e-95 353.2 347 55.3
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 8.4e-95 351.3 341 56.3
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 5.5e-94 348.6 341 56.6
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 9.3e-94 347.8 346 56.6
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 3.5e-93 345.9 347 54.5
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 6.0e-93 345.1 343 55.7
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 1.0e-92 344.4 382 51.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.3e-92 344.0 349 55.9
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 2.3e-92 343.2 345 53.6
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 2.3e-92 343.2 348 55.5
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.0e-92 342.8 340 55.6
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 5.1e-92 342.0 354 53.4
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 5.1e-92 342.0 339 56.0
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 5.1e-92 342.0 339 56.0
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 2.5e-91 339.7 298 60.1
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 4.1e-89 332.4 344 53.2
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 3.4e-88 329.3 351 53.0
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 3.8e-87 325.9 312 56.7
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 3.8e-87 325.9 340 52.9
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 1.4e-86 323.9 306 55.2
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 3.2e-86 322.8 336 52.1
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 5.5e-86 322.0 347 52.2
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 7.2e-86 321.6 308 55.2
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 2.7e-85 319.7 317 55.2
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.3e-84 317.4 337 50.4
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 2.3e-84 316.6 381 47.8
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 3.9e-84 315.8 295 56.6
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 7.4e-83 311.6 345 51.6
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.3e-82 310.8 315 54.6
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 6.3e-82 308.5 286 55.2
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 4.8e-74 282.3 342 50.6
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 1.0e-63 248.1 343 48.1
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 2.3e-60 236.9 297 44.1
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 6.7e-60 235.3 246 48.4
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 3.3e-59 233.0 225 52.4
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 3.2e-54 216.5 208 55.8
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 1.6e-53 214.2 285 46.0
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 2.1e-53 213.8 297 41.4
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 8.0e-37 158.7 137 62.8
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 2.4e-33 147.1 96 68.8
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 2.0e-32 144.1 247 40.9
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 1.1e-30 138.3 293 33.4
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 3.6e-29 133.3 144 55.6
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 9.2e-25 118.6 290 29.7
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 2.7e-24 117.1 101 56.4
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 6.0e-24 115.9 119 49.6
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-22 110.5 298 27.9
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 6.8e-20 102.4 135 50.4
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 3.1e-12 77.0 149 34.2
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.9e-10 70.5 58 62.1
SMO164G0023 Selaginella moellendorffii HOM05D007241 ORTHO05D009142 3.5e-08 63.5 331 23.3


User provided reference genes

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