Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 0.0e+00 1182.9 650 100.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 0.0e+00 1089.7 624 97.1
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.0e-206 723.0 645 67.0
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 4.5e-190 668.7 346 95.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 4.0e-162 575.9 525 61.7
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 3.8e-160 569.3 549 59.2
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.2e-159 566.2 523 56.2
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.2e-155 552.0 462 67.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.2e-150 537.7 528 55.9
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 4.6e-150 535.8 518 53.3
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 4.3e-148 529.3 517 58.6
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.2e-147 525.4 530 54.7
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.1e-147 525.0 575 52.9
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.1e-143 514.6 552 50.0
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 5.6e-140 502.3 559 51.3
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.6e-139 500.7 545 54.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 6.2e-139 498.8 520 49.2
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.2e-137 494.6 557 51.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.2e-137 494.6 548 54.6
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 6.4e-136 488.8 554 47.1
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 5.5e-135 485.7 484 50.2
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.5e-134 483.0 520 52.3
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 6.0e-134 482.3 573 48.2
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.8e-133 480.7 556 50.2
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 5.1e-133 479.2 515 50.1
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.1e-132 478.0 520 51.9
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.5e-132 477.6 522 53.4
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.5e-132 476.9 513 48.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 4.3e-132 476.1 529 50.7
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 3.7e-131 473.0 534 50.2
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 8.2e-131 471.9 497 51.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.1e-130 471.5 541 48.6
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.0e-129 467.2 516 49.6
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.5e-129 466.1 529 48.0
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.9e-128 463.4 518 47.9
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.1e-127 461.5 566 45.9
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-127 461.5 524 47.5
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-127 461.1 524 47.5
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.9e-127 460.7 549 46.6
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.2e-127 459.9 536 50.6
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 7.1e-127 458.8 528 47.2
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.3e-125 454.5 517 46.0
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 3.3e-124 449.9 508 49.2
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.7e-124 449.1 529 49.0
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.3e-123 448.0 547 49.2
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.8e-123 446.8 526 49.4
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 2.4e-122 443.7 527 46.3
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 6.9e-122 442.2 530 46.8
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 9.0e-122 441.8 522 50.6
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 3.4e-121 439.9 515 45.4
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.9e-119 434.1 556 48.2
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 9.4e-119 431.8 533 47.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.6e-118 429.9 448 54.2
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.6e-118 429.5 516 47.5
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.1e-117 426.0 530 46.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 8.8e-117 425.2 535 47.7
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.7e-115 419.9 523 44.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 4.8e-115 419.5 527 48.0
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 6.3e-115 419.1 541 46.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.8e-114 417.5 574 44.8
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.9e-114 415.6 524 47.5
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.2e-113 414.8 495 45.5
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.0e-112 411.8 546 47.4
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.3e-112 411.4 532 47.6
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-111 407.9 551 41.6
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 7.9e-110 402.1 553 45.6
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.8e-109 401.0 537 43.8
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.0e-109 400.2 547 46.6
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.7e-107 394.4 538 45.9
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.7e-107 393.3 521 45.1
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 3.7e-107 393.3 532 44.2
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 6.3e-107 392.5 540 41.5
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 4.1e-106 389.8 519 45.3
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 5.3e-106 389.4 564 42.2
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 4.5e-105 386.3 562 38.4
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 2.9e-104 383.6 552 42.8
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.9e-104 383.6 354 55.9
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 3.8e-104 383.3 533 44.3
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 6.5e-104 382.5 529 45.0
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.1e-100 371.7 414 54.3
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.0e-100 370.9 551 44.3
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 9.7e-100 368.6 403 56.8
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 7.7e-97 359.0 542 43.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.5e-95 354.8 472 44.1
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 7.5e-92 342.4 355 56.6
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.7e-91 341.3 262 90.8
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 6.3e-91 339.3 470 41.5
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 8.3e-91 339.0 325 51.7
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.4e-90 337.4 517 38.9
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.1e-86 324.3 501 42.7
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 6.3e-83 312.8 436 46.6
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-80 305.4 318 49.1
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 8.0e-78 295.8 479 37.0
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.0e-77 293.9 528 35.6
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.4e-76 290.4 479 36.3
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.1e-71 275.4 478 35.8
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.0e-64 250.8 388 39.4
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 2.1e-62 244.6 604 29.5
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 8.1e-62 242.7 220 56.4
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 5.4e-58 229.9 354 37.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 9.2e-58 229.2 217 55.3
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.1e-54 218.0 289 42.2
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.8e-53 214.9 287 42.9
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.9e-50 204.9 638 27.4
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 9.2e-50 202.6 232 46.6
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 3.6e-46 190.7 316 45.3
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 3.9e-40 170.6 110 70.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 4.4e-36 157.1 122 58.2
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 2.9e-35 154.5 122 60.7
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 3.8e-35 154.1 140 55.7
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-33 148.7 136 51.5
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 6.0e-33 146.7 104 63.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.7e-32 142.9 321 32.1
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 3.3e-31 141.0 112 59.8
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 5.6e-31 140.2 113 57.5
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.1e-30 138.3 121 54.5
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.8e-30 137.1 109 57.8
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.9e-29 133.3 114 48.2
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.5e-28 132.1 116 52.6
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.4e-26 125.6 130 51.5
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 3.9e-24 117.5 128 46.9
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 6.7e-24 116.7 102 52.0
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.1e-22 111.7 100 49.0
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 4.8e-22 110.5 80 60.0
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.1e-21 109.4 92 53.3
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.3e-21 107.1 80 53.8
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.5e-20 105.5 413 26.2
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 3.2e-18 97.8 98 52.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 4.2e-18 97.4 95 50.5
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 4.6e-17 94.0 124 44.4
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 6.0e-17 93.6 86 51.2
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-16 92.0 91 46.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.9e-16 90.9 75 46.7
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 5.1e-16 90.5 103 43.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.3e-14 85.9 75 52.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-12 79.3 101 39.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-11 76.3 75 42.7
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.4e-11 73.2 62 48.4
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 8.4e-11 73.2 40 80.0
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.1e-10 72.8 82 40.2
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-10 72.8 69 47.8
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-10 72.8 69 47.8
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.5e-10 70.5 109 37.6
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-09 69.3 78 37.2
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.3e-08 65.1 38 60.5
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 3.0e-08 64.7 45 66.7
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.7e-08 63.5 57 50.9
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.3e-07 61.2 115 26.1
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 9.7e-07 59.7 47 57.4
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.6e-06 58.9 106 34.9


User provided reference genes

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