Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g079830.4 Solanum lycopersicum HOM05D005378 ORTHO05D006986 6.0e-175 617.5 325 100.0
Sopen08g028190 Solanum pennellii HOM05D005378 ORTHO05D006986 2.4e-163 578.9 314 97.8
PGSC0003DMG400003914 Solanum tuberosum HOM05D005378 ORTHO05D006986 4.6e-159 564.7 313 95.2
Nitab4.5_0005167g0010 Nicotiana tabacum HOM05D005378 ORTHO05D006986 2.7e-143 512.3 323 84.2
CAN.G630.23 Capsicum annuum HOM05D005378 ORTHO05D006986 1.0e-142 510.4 312 86.9
Nitab4.5_0012494g0030 Nicotiana tabacum HOM05D005378 ORTHO05D006986 3.0e-142 508.8 318 85.5
Peaxi162Scf00620g00241 Petunia axillaris HOM05D005378 ORTHO05D006986 2.0e-117 426.4 227 93.0
Cfa012056 Carpinus fangiana HOM05D005378 ORTHO05D006986 2.2e-116 422.9 327 70.3
Glyma.05G055000 Glycine max HOM05D005378 ORTHO05D006986 2.7e-114 416.0 308 74.4
Haze_09001 Corylus avellana HOM05D005378 ORTHO05D006986 5.9e-114 414.8 317 69.7
Hma1.2p1_2135F.1_g314860 Hydrangea macrophylla HOM05D005378 ORTHO05D006986 1.3e-113 413.7 319 71.8
QL12p016275 Quercus lobata HOM05D005378 ORTHO05D006986 2.1e-111 406.4 318 67.3
CsaV3_3G003410 Cucumis sativus L. HOM05D005378 ORTHO05D006986 6.1e-111 404.8 326 68.4
Eucgr.E00505 Eucalyptus grandis HOM05D005378 ORTHO05D006986 6.1e-111 404.8 285 72.3
Potri.001G113800 Populus trichocarpa HOM05D005378 ORTHO05D006986 6.1e-111 404.8 319 69.0
Duzib205G1930 Durio zibethinus HOM05D005378 ORTHO05D006986 1.2e-109 400.6 319 69.3
Manes.02G028800 Manihot esculenta HOM05D005378 ORTHO05D006986 2.0e-109 399.8 321 68.8
CANSAT21G0731 Cannabis sativa HOM05D005378 ORTHO05D006986 5.7e-109 398.3 321 70.7
DCAR_006775 Daucus carota HOM05D005378 ORTHO05D006986 7.5e-109 397.9 273 74.4
Migut.A00880 Erythranthe guttata HOM05D005378 ORTHO05D006986 7.5e-109 397.9 327 66.4
Oeu001912.1 Olea europaea HOM05D005378 ORTHO05D006986 7.5e-109 397.9 321 68.8
Cc08_g13620 Coffea canephora HOM05D005378 ORTHO05D006986 1.3e-108 397.1 318 70.1
Phvul.003G217000 Phaseolus vulgaris HOM05D005378 ORTHO05D006986 1.3e-108 397.1 322 70.5
TWI60G1116 Tripterygium wilfordii HOM05D005378 ORTHO05D006986 1.7e-108 396.7 317 69.1
TAR629G1125 Trochodendron aralioides HOM05D005378 ORTHO05D006986 2.2e-108 396.4 324 67.6
CiPaw.11G143700 Carya illinoinensis HOM05D005378 ORTHO05D006986 2.8e-108 396.0 319 65.5
Prupe.5G084900 Prunus persica HOM05D005378 ORTHO05D006986 6.3e-108 394.8 320 67.2
MSTRG.25561 Avicennia marina HOM05D005378 ORTHO05D006986 3.1e-107 392.5 326 65.3
Lj2A203G52 Lonicera japonica HOM05D005378 ORTHO05D006986 3.1e-107 392.5 346 64.7
Lalb_Chr05g0225201 Lupinus albus HOM05D005378 ORTHO05D006986 7.0e-107 391.3 328 67.4
Gohir.D08G194800 Gossypium hirsutum HOM05D005378 ORTHO05D006986 1.6e-106 390.2 251 76.9
Sabra01G0087000 Salix brachista HOM05D005378 ORTHO05D006986 2.0e-106 389.8 320 66.9
Medtr4g101820 Medicago truncatula HOM05D005378 ORTHO05D006986 2.7e-106 389.4 316 67.7
Gohir.A08G176000 Gossypium hirsutum HOM05D005378 ORTHO05D006986 4.5e-106 388.7 292 69.9
TPR.G37594 Trifolium pratense HOM05D005378 ORTHO05D006986 4.5e-106 388.7 251 78.5
FAN13G1015 Fragaria x ananassa HOM05D005378 ORTHO05D006986 5.9e-106 388.3 319 68.0
PGR042G0099 Punica granatum HOM05D005378 ORTHO05D006986 7.7e-106 387.9 317 65.9
RcHm_v2.0_Chr7g0200231 Rosa chinensis HOM05D005378 ORTHO05D006986 7.7e-106 387.9 320 65.9
Sed0008997 Sechium edule HOM05D005378 ORTHO05D006986 1.3e-105 387.1 319 69.0
SGA_v2.0_scaffold37G14872 Striga asiatica HOM05D005378 ORTHO05D006986 2.9e-105 386.0 321 66.0
Rhsim10G0118700 Rhododendron simsii HOM05D005378 ORTHO05D006986 6.6e-105 384.8 237 80.6
ClCG00G000130 Citrullus lanatus HOM05D005378 ORTHO05D006986 1.1e-104 384.0 275 72.4
Gorai.004G205500 Gossypium raimondii HOM05D005378 ORTHO05D006986 1.5e-104 383.6 333 65.2
VMungo0251G1120 Vigna mungo HOM05D005378 ORTHO05D006986 1.5e-104 383.6 318 66.0
SalBow6G7208 Salvia bowleyana HOM05D005378 ORTHO05D006986 2.5e-104 382.9 326 65.0
Ciclev10021134m.g Citrus clementina HOM05D005378 ORTHO05D006986 3.3e-104 382.5 319 65.5
Cpa.g.sc29.47 Carica papaya HOM05D005378 ORTHO05D006986 4.3e-104 382.1 321 67.0
GSVIVG01019902001 Vitis vinifera HOM05D005378 ORTHO05D006986 4.3e-104 382.1 245 76.7
Ca_12295_v3 Cicer arietinum L. HOM05D005378 ORTHO05D006986 5.6e-104 381.7 270 74.1
MD04G1072900 Malus domestica HOM05D005378 ORTHO05D006986 5.6e-104 381.7 325 64.0
EL10Ac5g12674 Beta vulgaris HOM05D005378 ORTHO05D006986 7.3e-104 381.3 326 66.6
Thecc.03G266200 Theobroma cacao HOM05D005378 ORTHO05D006986 7.3e-104 381.3 318 66.0
arahy.Tifrunner.gnm1.ann1.2GQ0W5 Arachis hypogaea HOM05D005378 ORTHO05D006986 1.2e-103 380.6 255 75.3
FAN18G4319 Fragaria x ananassa HOM05D005378 ORTHO05D006986 1.2e-103 380.6 317 64.4
arahy.Tifrunner.gnm1.ann1.1K1ZSN Arachis hypogaea HOM05D005378 ORTHO05D006986 1.6e-103 380.2 255 75.3
THA.LOC104818281 Tarenaya hassleriana HOM05D005378 ORTHO05D006986 1.6e-103 380.2 245 76.7
ClCG10G003380 Citrullus lanatus HOM05D005378 ORTHO05D006986 2.8e-103 379.4 327 64.5
Potri.003G118400 Populus trichocarpa HOM05D005378 ORTHO05D006986 3.6e-103 379.0 320 64.1
Atru.chr9.1492 Acer truncatum HOM05D005378 ORTHO05D006986 6.1e-103 378.3 277 70.4
ECA233G4179 Erigeron canadensis HOM05D005378 ORTHO05D006986 6.1e-103 378.3 320 66.6
HanXRQChr02g0047721 Helianthus annuus HOM05D005378 ORTHO05D006986 6.1e-103 378.3 320 65.9
Hund14698 Selenicereus undatus HOM05D005378 ORTHO05D006986 8.0e-103 377.9 288 70.1
Lj4g0009345 Lotus japonicus HOM05D005378 ORTHO05D006986 1.8e-102 376.7 318 66.0
FvH4_5g01090 Fragaria vesca HOM05D005378 ORTHO05D006986 3.0e-102 375.9 320 64.7
PSO782G2812 Papaver somniferum HOM05D005378 ORTHO05D006986 4.0e-102 375.6 317 66.2
C08p47320 Brassica napus HOM05D005378 ORTHO05D006986 5.2e-102 375.2 319 66.8
Psat4g069440 Pisum sativum HOM05D005378 ORTHO05D006986 2.6e-101 372.9 270 73.3
Sabra03G0082400 Salix brachista HOM05D005378 ORTHO05D006986 2.6e-101 372.9 319 63.9
MSTRG.12037 Avicennia marina HOM05D005378 ORTHO05D006986 9.8e-101 370.9 232 78.4
Aa31LG2G450 Aethionema arabicum HOM05D005378 ORTHO05D006986 1.3e-100 370.5 280 68.6
Aqoxy7G00527 Aquilegia oxysepala HOM05D005378 ORTHO05D006986 1.3e-100 370.5 316 63.3
FAN08G1559 Fragaria x ananassa HOM05D005378 ORTHO05D006986 2.9e-100 369.4 367 58.3
Nn6g34347 Nelumbo nucifera HOM05D005378 ORTHO05D006986 8.3e-100 367.9 309 64.1
Sc01g0008970 Simmondsia chinensis HOM05D005378 ORTHO05D006986 1.4e-99 367.1 253 73.1
Lsat_1_v5_gn_6_10640 Lactuca sativa HOM05D005378 ORTHO05D006986 2.4e-99 366.3 253 73.9
Ah.12g057930 Amaranthus hybridus HOM05D005378 ORTHO05D006986 3.2e-99 365.9 226 79.6
A09p63820 Brassica napus HOM05D005378 ORTHO05D006986 3.2e-99 365.9 319 64.3
BolC8t52274H Brassica oleracea HOM05D005378 ORTHO05D006986 3.2e-99 365.9 321 65.4
AL1G23870 Arabidopsis lyrata HOM05D005378 ORTHO05D006986 1.2e-98 364.0 317 63.7
Carub.0001s1221 Capsella rubella HOM05D005378 ORTHO05D006986 1.6e-98 363.6 230 77.8
AUR62017340 Chenopodium quinoa HOM05D005378 ORTHO05D006986 2.0e-98 363.2 342 61.7
MD00G1069800 Malus domestica HOM05D005378 ORTHO05D006986 5.9e-98 361.7 247 71.3
BraA09t41728Z Brassica rapa HOM05D005378 ORTHO05D006986 7.8e-98 361.3 242 75.2
AUR62010552 Chenopodium quinoa HOM05D005378 ORTHO05D006986 1.0e-97 360.9 258 72.5
BcaC07g41696 Brassica carinata HOM05D005378 ORTHO05D006986 2.3e-97 359.8 303 66.3
Zm00001eb073490 Zea mays HOM05D005378 ORTHO05D006986 3.9e-97 359.0 315 61.6
BcaB03g13183 Brassica carinata HOM05D005378 ORTHO05D006986 5.0e-97 358.6 278 68.3
Sp1g11100 Schrenkiella parvula HOM05D005378 ORTHO05D006986 8.6e-97 357.8 320 62.2
BraA08t35202Z Brassica rapa HOM05D005378 ORTHO05D006986 1.9e-96 356.7 273 68.9
Oeu001910.1 Olea europaea HOM05D005378 ORTHO05D006986 1.9e-96 356.7 243 74.1
A08p32790 Brassica napus HOM05D005378 ORTHO05D006986 2.5e-96 356.3 230 77.8
Thhalv10008232m.g Eutrema salsugineum HOM05D005378 ORTHO05D006986 2.5e-96 356.3 230 77.8
C08p15470 Brassica napus HOM05D005378 ORTHO05D006986 4.3e-96 355.5 279 68.5
BolC8t49175H Brassica oleracea HOM05D005378 ORTHO05D006986 4.3e-96 355.5 279 68.5
CARHR012800 Cardamine hirsuta HOM05D005378 ORTHO05D006986 4.3e-96 355.5 318 62.6
BcaB08g34272 Brassica carinata HOM05D005378 ORTHO05D006986 7.3e-96 354.8 327 62.1
AT1G12520 Arabidopsis thaliana HOM05D005378 ORTHO05D006986 1.6e-95 353.6 317 61.2
MELO3C014007.2 Cucumis melo HOM05D005378 ORTHO05D006986 4.0e-94 349.0 360 58.6
PSO478G1428 Papaver somniferum HOM05D005378 ORTHO05D006986 6.8e-94 348.2 283 67.1
PGR031G2614 Punica granatum HOM05D005378 ORTHO05D006986 9.8e-93 344.4 360 56.4
ATR0757G076 Amborella trichopoda HOM05D005378 ORTHO05D006986 3.5e-90 335.9 224 72.3
CDE01G0558 Ceratophyllum demersum HOM05D005378 ORTHO05D006986 7.8e-90 334.7 232 70.7
COL.COLO4_23814 Corchorus olitorius HOM05D005378 ORTHO05D006986 8.6e-89 331.3 310 62.3
HPP92_021079 Vanilla planifolia HOM05D005378 ORTHO05D006986 2.3e-86 323.2 317 55.8
Actinidia02066 Actinidia chinensis HOM05D005378 ORTHO05D006986 2.6e-85 319.7 244 68.0
Os04g0573200 Oryza sativa ssp. japonica HOM05D005378 ORTHO05D006986 8.3e-84 314.7 207 74.9
AagrBONN_evm.TU.Sc2ySwM_228.1340 Anthoceros agrestis HOM05D005378 ORTHO05D006986 2.7e-82 309.7 309 55.3
Pp3c21_8100 Physcomitrium patens HOM05D005378 ORTHO05D006986 2.5e-80 303.1 232 63.8
Mapoly0127s0018 Marchantia polymorpha HOM05D005378 ORTHO05D006986 2.8e-79 299.7 234 62.8
Pp3c18_10490 Physcomitrium patens HOM05D005378 ORTHO05D006986 3.4e-77 292.7 230 62.6
Dinv37717 Davidia involucrata HOM05D005378 ORTHO05D006986 2.2e-76 290.0 238 68.5
SMO201G0146 Selaginella moellendorffii HOM05D005378 ORTHO05D006986 4.1e-75 285.8 217 66.4
CSS0049222 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 5.8e-69 265.4 234 63.7
CBR_g27778 Chara braunii HOM05D005378 ORTHO05D006986 1.9e-56 223.8 283 44.5
Actinidia14494 Actinidia chinensis HOM05D005378 ORTHO05D006986 2.1e-55 220.3 161 69.6
SEGI_32640 Sequoiadendron giganteum HOM05D005378 ORTHO05D006986 3.1e-54 216.5 132 76.5
Oeu001911.1 Olea europaea HOM05D005378 ORTHO05D006986 2.9e-52 209.9 126 81.7
BcaC06g31923 Brassica carinata HOM05D005378 ORTHO05D006986 4.2e-51 206.1 186 58.1
unitig_744.g24326 Utricularia gibba HOM05D005378 ORTHO05D006986 1.0e-49 201.4 135 71.9
BcaC04g22737 Brassica carinata HOM05D005378 ORTHO05D006986 3.9e-49 199.5 151 62.9
C09p15780 Brassica napus HOM05D005378 ORTHO05D006986 3.9e-49 199.5 151 62.9
BolC9t54490H Brassica oleracea HOM05D005378 ORTHO05D006986 3.9e-49 199.5 151 62.9
A09p13280 Brassica napus HOM05D005378 ORTHO05D006986 2.8e-47 193.4 151 62.3
BraA09t36976Z Brassica rapa HOM05D005378 ORTHO05D006986 6.2e-47 192.2 151 62.3
Atru.chr3.15 Acer truncatum HOM05D000534 ORTHO05D000389 6.7e-41 172.2 107 79.4
Atru.chr7.434 Acer truncatum HOM05D005378 ORTHO05D006986 3.3e-40 169.9 108 78.7
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 5.7e-40 169.1 107 77.6
Migut.D00824 Erythranthe guttata HOM05D005378 ORTHO05D006986 5.7e-40 169.1 160 59.4
CSS0006015 Camellia sinensis var. sinensis HOM05D005378 ORTHO05D006986 4.2e-35 152.9 80 92.5
AagrBONN_evm.TU.Sc2ySwM_228.914 Anthoceros agrestis HOM05D005378 ORTHO05D006986 3.6e-34 149.8 151 51.7
ClCG00G006560 Citrullus lanatus HOM05D005378 ORTHO05D006986 3.0e-33 146.7 83 80.7
unitig_22.g5478 Utricularia gibba HOM05D002871 ORTHO05D003307 3.0e-33 146.7 228 42.1
MCO04G010 Micromonas commoda HOM05D005378 ORTHO05D006986 6.5e-28 129.0 252 35.7
Mapoly0152s0017 Marchantia polymorpha HOM05D005378 ORTHO05D006986 9.4e-27 125.2 213 36.2
TAR374G0182 Trochodendron aralioides HOM05D005378 ORTHO05D006986 2.3e-25 120.6 179 43.0
Atru.chr3.3516 Acer truncatum HOM05D005378 ORTHO05D006986 1.5e-24 117.9 63 87.3
Pp3c17_14500 Physcomitrium patens HOM05D005378 ORTHO05D001264 6.3e-23 112.5 161 40.4
BolC4t24476H Brassica oleracea HOM05D005378 ORTHO05D006986 5.3e-22 109.4 65 81.5
Cfa026490 Carpinus fangiana HOM05D005378 ORTHO05D125958 8.2e-15 85.5 128 39.8
Atru.chr5.2888 Acer truncatum HOM05D005378 ORTHO05D037884 1.6e-10 71.2 46 73.9
Atru.chr6.1840 Acer truncatum HOM05D005378 ORTHO05D037884 1.2e-08 65.1 38 81.6
SMO340G0225 Selaginella moellendorffii HOM05D001405 ORTHO05D001264 1.5e-08 64.7 127 35.4
Mapoly0007s0275 Marchantia polymorpha HOM05D001405 ORTHO05D001264 9.7e-08 62.0 126 33.3
FAN10G2014 Fragaria x ananassa HOM05D000520 ORTHO05D000399 3.7e-07 60.1 59 47.5
SMO197G0062 Selaginella moellendorffii HOM05D001405 ORTHO05D001264 3.7e-07 60.1 125 33.6
EL10Ac9g22624 Beta vulgaris HOM05D001405 ORTHO05D001264 4.8e-07 59.7 159 28.9
TAR369G0490 Trochodendron aralioides HOM05D001405 ORTHO05D001264 4.8e-07 59.7 123 33.3
FAN05G5273 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.1e-06 58.5 59 45.8
FAN06G1356 Fragaria x ananassa HOM05D000520 ORTHO05D000399 1.1e-06 58.5 59 45.8
Pp3c9_24840 Physcomitrium patens HOM05D001405 ORTHO05D001264 1.1e-06 58.5 125 31.2
SalBow6G6631 Salvia bowleyana HOM05D000262 ORTHO05D000399 1.1e-06 58.5 64 45.3
CANSAT64G0315 Cannabis sativa HOM05D001405 ORTHO05D001264 1.4e-06 58.2 146 29.5
Peaxi162Scf00983g00213 Petunia axillaris HOM05D001405 ORTHO05D001264 1.4e-06 58.2 137 29.9
Pp3c9_25690 Physcomitrium patens HOM05D001405 ORTHO05D001264 2.4e-06 57.4 125 31.2
Prupe.6G335000 Prunus persica HOM05D001405 ORTHO05D001264 2.4e-06 57.4 124 31.5
RcHm_v2.0_Chr1g0332931 Rosa chinensis HOM05D000999 ORTHO05D000399 2.4e-06 57.4 59 45.8
TPR.G36757 Trifolium pratense HOM05D001405 ORTHO05D001264 2.4e-06 57.4 125 31.2
vmacro14390 Vaccinium macrocarpon HOM05D001405 ORTHO05D001264 2.4e-06 57.4 157 30.6
BcaB06g28194 Brassica carinata HOM05D001405 ORTHO05D001264 3.1e-06 57.0 125 30.4
CBR_g48191 Chara braunii HOM05D005378 ORTHO05D000399 3.1e-06 57.0 143 28.7
FvH4_3g30620 Fragaria vesca HOM05D001405 ORTHO05D001264 3.1e-06 57.0 125 32.0
Medtr4g057240 Medicago truncatula HOM05D001405 ORTHO05D001264 3.1e-06 57.0 125 31.2
PSO801G0219 Papaver somniferum HOM05D001405 ORTHO05D001264 4.1e-06 56.6 128 30.5
ATR0329G010 Amborella trichopoda HOM05D001405 ORTHO05D001264 5.3e-06 56.2 125 32.0
AagrBONN_evm.TU.Sc2ySwM_228.818 Anthoceros agrestis HOM05D001405 ORTHO05D001264 5.3e-06 56.2 131 32.8
BcaC02g08201 Brassica carinata HOM05D001405 ORTHO05D001264 5.3e-06 56.2 125 30.4
Carub.0004s0900 Capsella rubella HOM05D001405 ORTHO05D001264 5.3e-06 56.2 125 30.4
PSO339G2292 Papaver somniferum HOM05D001405 ORTHO05D001264 5.3e-06 56.2 128 30.5
SalBow6G1068 Salvia bowleyana HOM05D001405 ORTHO05D001264 5.3e-06 56.2 125 33.6
Atru.chr6.1928 Acer truncatum HOM05D000262 ORTHO05D000300 7.0e-06 55.8 63 36.5
Ciclev10017734m.g Citrus clementina HOM05D000262 ORTHO05D000300 7.0e-06 55.8 63 41.3
Dinv16224 Davidia involucrata HOM05D001405 ORTHO05D001264 7.0e-06 55.8 125 31.2
Potri.004G216700 Populus trichocarpa HOM05D001405 ORTHO05D001264 7.0e-06 55.8 133 30.8
Prupe.1G523200 Prunus persica HOM05D000999 ORTHO05D000399 7.0e-06 55.8 61 42.6
GSVIVG01031462001 Vitis vinifera HOM05D001405 ORTHO05D001264 7.0e-06 55.8 125 31.2
CARHR121080 Cardamine hirsuta HOM05D001405 ORTHO05D001264 9.1e-06 55.5 128 29.7
Lj2C1007T3 Lonicera japonica HOM05D001405 ORTHO05D001264 9.1e-06 55.5 125 34.4
Lj3g0018098 Lotus japonicus HOM05D000262 ORTHO05D000300 9.1e-06 55.5 63 41.3
MD02G1255400 Malus domestica HOM05D000999 ORTHO05D000399 9.1e-06 55.5 59 44.1
MD07G1066200 Malus domestica HOM05D000999 ORTHO05D000399 9.1e-06 55.5 59 44.1
MD11G1148200 Malus domestica HOM05D001405 ORTHO05D001264 9.1e-06 55.5 125 31.2
Prupe.2G083400 Prunus persica HOM05D000999 ORTHO05D000399 9.1e-06 55.5 59 44.1
Sopen11g026140 Solanum pennellii HOM05D001405 ORTHO05D001264 9.1e-06 55.5 125 30.4
SGA_v2.0_scaffold277G46694 Striga asiatica HOM05D001405 ORTHO05D001264 9.1e-06 55.5 125 30.4


User provided reference genes

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