Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g074510.1 Solanum lycopersicum HOM05D000104 ORTHO05D004363 1.5e-95 352.8 177 100.0
Peaxi162Scf00213g01731 Petunia axillaris HOM05D000104 ORTHO05D004363 4.1e-69 265.0 150 88.7
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 2.0e-68 262.7 132 99.2
Nitab4.5_0001131g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 3.9e-67 258.5 132 97.7
CAN.G195.23 Capsicum annuum HOM05D000104 ORTHO05D004363 8.0e-65 250.8 131 96.9
Nitab4.5_0002482g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 3.0e-59 232.3 125 94.4
Dinv09442 Davidia involucrata HOM05D000104 ORTHO05D004363 3.2e-53 212.2 138 81.2
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 9.2e-53 210.7 138 81.2
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 1.2e-52 210.3 137 79.6
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 1.2e-52 210.3 138 81.9
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 7.8e-52 207.6 138 79.7
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 3.0e-51 205.7 135 79.3
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 6.6e-51 204.5 137 77.4
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 8.6e-51 204.1 135 79.3
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 1.5e-50 203.4 137 76.6
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 1.9e-50 203.0 138 78.3
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 2.5e-50 202.6 135 78.5
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 4.3e-50 201.8 137 76.6
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 4.3e-50 201.8 138 76.1
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 4.3e-50 201.8 138 76.8
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 7.3e-50 201.1 138 75.4
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 7.3e-50 201.1 137 74.5
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 7.3e-50 201.1 134 77.6
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 9.6e-50 200.7 138 76.1
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 1.2e-49 200.3 138 76.8
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 1.2e-49 200.3 138 76.1
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 1.2e-49 200.3 137 77.4
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 2.1e-49 199.5 134 77.6
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 2.1e-49 199.5 138 76.1
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 6.2e-49 198.0 138 75.4
Haze_20464 Corylus avellana HOM05D000104 ORTHO05D004363 1.4e-48 196.8 138 76.8
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 1.8e-48 196.4 138 76.8
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 3.1e-48 195.7 138 76.1
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 4.0e-48 195.3 135 77.0
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 5.2e-48 194.9 138 74.6
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 8.9e-48 194.1 137 75.2
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 1.2e-47 193.7 138 73.9
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.2e-47 193.7 138 73.9
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.2e-47 193.7 138 73.9
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 1.5e-47 193.4 137 75.2
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 2.0e-47 193.0 138 73.9
MD03G1000900 Malus domestica HOM05D000104 ORTHO05D004363 2.6e-47 192.6 135 75.6
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 2.6e-47 192.6 136 74.3
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 7.6e-47 191.0 138 72.5
FAN11G0644 Fragaria x ananassa HOM05D000104 ORTHO05D004363 9.9e-47 190.7 138 73.2
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 1.7e-46 189.9 136 73.5
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 1.7e-46 189.9 137 71.5
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 2.2e-46 189.5 138 73.9
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 4.9e-46 188.3 134 71.6
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 1.4e-45 186.8 133 72.9
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 1.4e-45 186.8 161 65.2
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 3.2e-45 185.7 137 70.8
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 1.6e-44 183.3 138 69.6
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 1.9e-42 176.4 137 66.4
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 2.5e-42 176.0 136 66.9
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 2.5e-42 176.0 135 70.4
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 3.3e-42 175.6 137 65.7
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 5.6e-42 174.9 133 70.7
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 9.6e-42 174.1 138 69.6
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 1.6e-41 173.3 134 68.7
unitig_93.g30711 Utricularia gibba HOM05D000104 ORTHO05D004363 1.6e-41 173.3 134 68.7
vmacro00212 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 1.6e-41 173.3 135 70.4
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 2.1e-41 172.9 138 65.9
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 2.1e-41 172.9 134 67.9
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 2.8e-41 172.6 133 69.9
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 3.6e-41 172.2 133 67.7
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 6.2e-41 171.4 134 67.9
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 1.1e-40 170.6 139 68.3
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 1.4e-40 170.2 135 67.4
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 1.8e-40 169.9 137 66.4
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 2.4e-40 169.5 134 66.4
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 1.5e-39 166.8 138 64.5
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 2.0e-39 166.4 135 65.2
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 2.0e-39 166.4 134 67.2
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 4.4e-39 165.2 138 67.4
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 1.3e-38 163.7 138 62.3
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 1.3e-38 163.7 133 66.2
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 2.2e-38 162.9 139 64.0
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 2.2e-38 162.9 138 65.9
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 2.2e-38 162.9 138 64.5
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 2.9e-38 162.5 138 64.5
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 4.9e-38 161.8 138 64.5
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 4.9e-38 161.8 138 64.5
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 4.9e-38 161.8 138 66.7
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 6.4e-38 161.4 173 56.1
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 1.9e-37 159.8 162 55.6
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 4.6e-36 155.2 138 59.4
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 6.0e-36 154.8 138 61.6
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 7.9e-36 154.5 162 54.9
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 2.3e-35 152.9 138 60.9
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 2.4e-32 142.9 135 59.3
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 1.2e-31 140.6 136 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 3.0e-27 125.9 172 47.1
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 2.4e-24 116.3 171 46.2
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 2.4e-24 116.3 164 48.2
CsaV3_3G021060 Cucumis sativus L. HOM05D000104 ORTHO05D004363 2.6e-23 112.8 73 75.3
AagrBONN_evm.TU.Sc2ySwM_228.4068 Anthoceros agrestis HOM05D000104 ORTHO05D004363 1.4e-21 107.1 128 50.0
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 2.3e-19 99.8 107 55.1
CsaV3_4G017750 Cucumis sativus L. HOM05D000104 ORTHO05D004363 4.3e-18 95.5 137 44.5
ATR0559G230 Amborella trichopoda HOM05D000104 ORTHO05D004363 8.2e-17 91.3 77 62.3
Cpa.g.sc73.36 Carica papaya HOM05D000104 ORTHO05D004363 1.8e-16 90.1 58 75.9
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 2.0e-15 86.7 164 39.6
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 3.4e-15 85.9 80 57.5
CARHR164210 Cardamine hirsuta HOM05D000104 ORTHO05D004363 1.7e-14 83.6 58 74.1
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 2.1e-12 76.6 93 46.2
C04p38150 Brassica napus HOM05D000104 ORTHO05D004363 7.9e-12 74.7 80 53.8
Os02g0161300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D004363 7.7e-07 58.2 43 58.1


User provided reference genes

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