Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 8.8e-226 786.6 382 100.0
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 1.0e-221 773.1 382 98.4
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 1.2e-201 706.4 379 91.8
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 4.1e-191 671.4 382 86.6
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.3e-186 655.6 382 84.8
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 8.6e-173 610.5 335 88.4
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 3.9e-149 531.9 373 69.7
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 9.6e-148 527.3 376 68.1
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 4.0e-146 521.9 386 66.8
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 2.0e-145 519.6 390 67.7
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 2.2e-144 516.2 387 66.7
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 2.9e-144 515.8 384 67.4
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 4.9e-144 515.0 385 67.5
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 6.5e-144 514.6 386 65.5
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.4e-143 513.5 389 65.3
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 2.5e-143 512.7 382 67.5
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 4.6e-142 508.4 382 66.8
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 1.0e-141 507.3 385 66.8
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 1.3e-141 506.9 382 66.0
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 6.7e-141 504.6 373 67.0
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 8.7e-141 504.2 386 66.3
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 1.1e-140 503.8 386 66.6
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.9e-140 503.1 386 66.6
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.5e-140 502.7 381 65.9
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 3.3e-140 502.3 383 66.1
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 3.3e-140 502.3 393 64.9
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 3.3e-140 502.3 382 66.5
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 4.3e-140 501.9 379 66.5
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 1.6e-139 500.0 384 65.4
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 3.7e-139 498.8 385 64.9
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.1e-138 497.3 382 65.2
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 1.8e-138 496.5 376 66.2
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 9.0e-138 494.2 382 64.9
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 9.0e-138 494.2 390 64.6
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.5e-137 493.4 381 65.4
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 1.5e-137 493.4 375 66.4
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 2.0e-137 493.0 384 65.1
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 2.6e-137 492.7 385 65.2
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 3.4e-137 492.3 377 66.0
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 4.5e-137 491.9 377 66.0
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 5.8e-137 491.5 387 64.9
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 7.6e-137 491.1 379 65.7
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.0e-136 490.7 375 65.9
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.3e-136 490.3 378 66.1
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 1.3e-136 490.3 378 65.3
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.7e-136 490.0 386 63.7
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 2.9e-136 489.2 380 64.5
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.4e-135 486.9 380 64.7
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.4e-135 486.9 368 67.4
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 2.5e-135 486.1 382 65.2
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 9.3e-135 484.2 368 66.0
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 9.3e-135 484.2 366 65.3
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.6e-134 483.4 383 61.9
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 2.1e-134 483.0 378 65.3
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 4.6e-134 481.9 381 64.3
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 2.3e-133 479.6 385 64.4
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 6.7e-133 478.0 369 64.0
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 8.7e-133 477.6 378 64.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 1.1e-132 477.2 387 59.7
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 1.1e-132 477.2 382 64.9
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.5e-132 476.1 385 63.9
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 1.2e-129 467.2 375 62.4
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.5e-129 466.8 389 60.7
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 5.9e-129 464.9 383 62.1
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.7e-128 463.4 391 61.4
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.9e-127 459.9 368 62.0
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 4.2e-127 458.8 417 58.3
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 4.2e-127 458.8 368 63.3
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 4.6e-126 455.3 386 60.4
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 6.1e-126 454.9 370 63.0
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 4.3e-124 448.7 362 64.1
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 1.8e-122 443.4 350 64.3
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 1.1e-119 434.1 393 58.8
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 8.8e-117 424.5 347 62.5
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 1.0e-112 411.0 317 65.3
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 1.2e-110 404.1 300 66.7
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.0e-109 401.0 328 62.8
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 1.8e-109 400.2 306 65.7
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 2.6e-108 396.4 454 49.6
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.7e-107 393.7 363 57.9
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 5.9e-105 385.2 374 52.9
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.1e-103 380.9 461 46.6
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 8.5e-96 354.8 337 57.0
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 3.0e-93 346.3 390 50.0
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.3e-88 330.1 316 55.4
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 3.8e-88 329.3 280 59.3
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 5.0e-88 328.9 293 59.0
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 3.6e-86 322.8 378 50.3
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 4.4e-84 315.8 545 39.1
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 6.8e-77 292.0 273 57.1
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 2.9e-75 286.6 266 56.8
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 6.0e-73 278.9 376 45.2
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 4.3e-71 272.7 167 75.4
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 1.2e-70 271.2 291 51.9
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.1e-70 270.4 193 68.9
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 4.0e-69 266.2 384 41.9
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 4.0e-69 266.2 419 37.7
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 7.5e-68 261.9 264 55.3
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 4.1e-66 256.1 262 55.0
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 7.1e-66 255.4 306 50.7
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 3.5e-65 253.1 281 52.0
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 1.1e-61 241.5 152 75.7
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 9.6e-55 218.4 253 49.0
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 2.6e-52 210.3 223 53.4
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 2.2e-51 207.2 124 83.9
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.3e-45 186.0 285 42.8
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 7.6e-44 182.2 390 33.6
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 9.9e-44 181.8 196 51.0
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 2.9e-43 180.3 406 35.2
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 7.9e-41 172.2 111 73.9
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 1.1e-31 141.7 82 79.3
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 7.4e-31 139.0 175 42.9
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 1.2e-28 131.7 84 73.8
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.2e-28 131.7 141 48.2
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.3e-24 118.2 80 68.8
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.1e-24 116.3 80 66.2
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-23 114.0 82 67.1
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 5.9e-20 102.8 57 82.5
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.5e-18 97.4 54 74.1
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 4.2e-18 96.7 56 78.6
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 4.3e-15 86.7 49 77.6
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.6e-14 84.7 56 66.1
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.7e-14 83.6 50 72.0
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 3.7e-14 83.6 50 72.0
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 8.5e-11 72.4 89 41.6
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 4.2e-10 70.1 120 37.5
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 6.1e-09 66.2 61 55.7
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-07 61.6 43 69.8
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 2.2e-06 57.8 28 89.3


User provided reference genes

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