Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 0.0e+00 1448.7 720 100.0
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 0.0e+00 1432.2 720 98.5
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1295.0 723 88.7
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 0.0e+00 1294.6 723 88.9
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 0.0e+00 1241.1 719 85.3
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 0.0e+00 1225.7 662 91.8
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1090.9 721 73.9
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1089.7 721 73.8
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1087.8 723 73.9
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1086.6 721 73.1
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.3e-310 1069.3 720 71.9
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 4.7e-305 1050.8 721 71.4
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 3.1e-304 1048.1 715 71.6
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 3.4e-303 1044.6 720 70.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 9.8e-303 1043.1 725 71.2
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.4e-301 1038.5 720 70.3
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 3.2e-301 1038.1 726 70.2
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.6e-300 1035.8 720 70.0
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 8.6e-299 1030.0 720 70.1
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.1e-298 1029.6 712 70.8
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.9e-298 1028.9 720 70.6
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 3.3e-298 1028.1 720 70.6
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 2.1e-297 1025.4 720 70.0
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 4.7e-297 1024.2 705 68.9
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 2.6e-295 1018.5 716 68.6
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 3.4e-295 1018.1 724 68.8
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 1.3e-294 1016.1 720 69.6
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.1e-293 1013.1 720 68.9
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.4e-293 1012.7 731 69.4
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 4.1e-293 1011.1 715 69.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 4.1e-293 1011.1 722 68.7
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.6e-292 1009.2 722 69.0
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 3.0e-291 1005.0 721 69.3
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 1.5e-290 1002.7 722 67.2
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 7.3e-290 1000.3 725 68.4
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 8.1e-289 996.9 724 68.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.8e-288 995.7 724 68.6
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 4.0e-288 994.6 722 68.8
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 3.4e-287 991.5 727 68.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 2.2e-286 988.8 708 68.1
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.4e-285 986.1 724 67.5
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.4e-285 985.3 709 67.3
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.2e-284 983.0 712 67.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 6.0e-284 980.7 710 68.0
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.3e-283 979.5 737 65.5
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.0e-283 978.4 710 67.6
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 4.7e-281 971.1 709 66.7
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.1e-280 968.4 709 68.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 4.0e-280 968.0 711 67.4
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 8.9e-280 966.8 720 66.0
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 1.2e-279 966.5 720 66.2
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.5e-279 966.1 719 65.9
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 2.0e-279 965.7 720 64.9
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 7.6e-279 963.8 724 64.6
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 9.9e-279 963.4 719 64.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 9.9e-279 963.4 665 70.2
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.7e-278 962.6 732 66.3
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 6.4e-278 960.7 722 64.4
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 8.4e-278 960.3 719 64.7
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 8.4e-278 960.3 719 64.4
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 3.2e-277 958.4 724 64.1
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.1e-276 955.7 719 64.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.5e-276 954.9 724 64.4
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.0e-275 953.4 724 64.1
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.7e-275 952.6 723 64.2
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 5.1e-275 951.0 724 64.1
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 4.3e-274 948.0 631 72.1
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 3.6e-273 944.9 722 65.4
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 6.2e-273 944.1 725 63.3
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 3.4e-271 938.3 724 65.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.7e-270 936.0 725 63.9
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 1.2e-268 929.9 737 62.1
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 4.8e-265 917.9 697 65.3
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 2.0e-263 912.5 732 64.1
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.4e-263 911.8 720 65.4
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 2.9e-262 908.7 542 80.6
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 8.4e-262 907.1 988 51.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.3e-259 899.8 730 60.5
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.8e-259 899.4 716 63.4
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.7e-257 891.7 631 68.6
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.6e-255 885.6 728 61.0
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.4e-255 885.2 628 68.6
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 6.5e-254 880.9 729 61.5
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 1.2e-252 876.7 723 60.7
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.1e-252 875.9 658 65.7
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.0e-251 873.6 645 66.0
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 6.7e-251 870.9 585 71.1
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 8.7e-251 870.5 589 70.1
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.9e-245 852.8 729 57.1
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.5e-245 852.4 726 59.4
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 3.2e-245 852.0 733 57.4
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 5.3e-240 834.7 873 51.1
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.1e-234 817.0 728 58.4
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 3.4e-231 805.4 565 67.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.9e-223 778.1 982 48.0
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.7e-209 732.3 710 55.2
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 2.5e-197 693.0 453 73.5
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.9e-185 652.9 486 66.3
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 6.4e-177 625.2 739 46.0
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 3.1e-163 579.7 703 43.2
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 4.9e-153 545.8 629 45.8
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 2.5e-149 533.5 362 70.2
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 9.0e-139 498.4 451 56.5
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.3e-129 468.0 383 59.8
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 2.7e-103 380.6 286 62.2
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 7.5e-101 372.5 254 72.8
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 3.6e-95 353.6 224 78.1
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.4e-83 315.1 291 57.7
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 4.0e-78 297.0 264 58.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.0e-70 270.4 167 82.0
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 4.3e-64 250.4 295 48.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.7e-57 228.4 149 66.4
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.2e-42 179.1 260 42.3
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 5.6e-40 170.2 154 58.4
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.8e-38 165.2 232 43.5
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.0e-37 161.8 260 39.2
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.3e-30 137.1 154 47.4
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.2e-29 136.0 112 57.1
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-28 132.9 169 40.2
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 7.1e-27 126.7 107 62.6
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-26 125.9 132 50.0
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-26 124.0 119 55.5
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 5.1e-25 120.6 83 68.7
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.5e-24 118.2 115 56.5
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.5e-24 118.2 98 57.1
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 2.0e-21 108.6 109 51.4
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 6.5e-20 103.6 104 56.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 2.5e-19 101.7 61 73.8
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 4.2e-19 100.9 109 49.5
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 4.2e-19 100.9 66 69.7
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.2e-18 99.4 109 48.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 2.1e-18 98.6 85 58.8
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 6.1e-18 97.1 105 55.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 7.9e-18 96.7 83 50.6
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 3.0e-17 94.7 77 59.7
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 5.1e-17 94.0 166 33.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 5.1e-17 94.0 75 68.0
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 9.7e-16 89.7 625 20.6
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 4.1e-14 84.3 55 72.7
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-13 82.4 108 41.7
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 5.9e-13 80.5 65 63.1
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 2.9e-12 78.2 129 38.0
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 6.5e-12 77.0 57 63.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 6.5e-12 77.0 58 58.6
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 8.5e-12 76.6 58 62.1
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 3.2e-11 74.7 57 61.4
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 3.2e-11 74.7 57 61.4
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.2e-11 74.7 63 58.7
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.7e-10 71.6 57 59.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.8e-09 68.9 74 51.4
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 6.7e-09 67.0 48 68.8
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 4.8e-07 60.8 104 42.3
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.4e-06 58.5 32 75.0


User provided reference genes

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