Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 2.2e-294 1015.0 561 100.0
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 9.1e-272 939.9 528 98.7
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.1e-207 726.1 535 76.3
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.6e-170 603.6 528 66.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.2e-154 550.8 565 63.2
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.2e-131 473.0 417 66.9
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.3e-60 238.4 589 38.4
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 4.7e-58 229.9 601 36.4
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 9.7e-56 222.2 569 36.4
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 3.8e-52 210.3 595 34.1
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 4.2e-51 206.8 575 36.5
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 3.6e-50 203.8 577 33.8
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.6e-50 203.8 370 41.9
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 2.3e-49 201.1 620 33.9
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 2.3e-49 201.1 603 33.8
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 3.0e-49 200.7 622 32.0
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 4.0e-49 200.3 532 35.0
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.6e-48 197.6 354 42.1
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.3e-47 195.3 366 42.3
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.8e-47 194.1 354 42.7
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.1e-46 192.2 554 35.0
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 4.1e-46 190.3 419 38.2
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.6e-45 188.3 650 32.0
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.7e-45 187.6 627 31.1
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.0e-44 185.7 600 33.3
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.3e-44 185.3 308 43.5
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 3.8e-44 183.7 414 37.4
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 3.8e-44 183.7 610 30.5
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 5.0e-44 183.3 574 35.4
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.0e-44 183.3 431 36.4
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 6.5e-44 183.0 572 32.3
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 8.5e-44 182.6 453 36.9
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.1e-43 182.2 586 31.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.5e-43 181.8 587 32.7
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.9e-43 181.4 431 35.5
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.2e-43 180.6 462 34.4
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 5.5e-43 179.9 518 33.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 5.5e-43 179.9 536 36.0
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 9.4e-43 179.1 360 37.8
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 2.7e-42 177.6 441 34.7
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.7e-42 176.8 633 30.5
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 6.1e-42 176.4 561 33.2
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 1.0e-41 175.6 403 37.5
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.4e-41 175.3 563 33.6
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.3e-41 174.5 558 34.1
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.5e-40 171.8 476 33.2
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 2.6e-40 171.0 553 34.5
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.6e-40 171.0 346 36.7
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 7.5e-40 169.5 536 34.1
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 9.8e-40 169.1 371 40.2
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 2.2e-39 167.9 381 36.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 8.3e-39 166.0 351 39.3
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.4e-38 164.5 306 43.8
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.1e-38 163.7 309 43.0
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 5.4e-38 163.3 514 33.5
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 9.1e-38 162.5 400 37.8
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.2e-37 162.2 352 39.8
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 1.6e-37 161.8 485 33.6
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 2.0e-37 161.4 580 30.9
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 2.0e-37 161.4 467 30.4
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.7e-37 161.0 328 39.6
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 2.7e-37 161.0 315 40.0
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 3.5e-37 160.6 623 31.0
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.5e-37 160.2 630 30.2
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 7.7e-37 159.5 559 30.9
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 2.3e-36 157.9 422 32.0
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 8.6e-36 156.0 302 39.7
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 4.2e-35 153.7 294 38.4
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 7.2e-35 152.9 585 31.1
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.2e-34 152.1 402 34.6
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.2e-34 152.1 496 34.3
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.6e-34 151.8 295 39.3
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 2.1e-34 151.4 301 36.9
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 2.1e-34 151.4 294 38.1
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 3.6e-34 150.6 448 31.5
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 4.7e-34 150.2 650 30.8
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 4.7e-34 150.2 297 39.1
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 6.1e-34 149.8 602 30.2
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 8.0e-34 149.4 499 32.1
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 8.0e-34 149.4 306 37.6
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.0e-33 149.1 337 40.4
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.4e-33 148.7 229 42.4
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.8e-33 148.3 301 36.5
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 2.3e-33 147.9 311 39.2
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 5.2e-33 146.7 401 35.2
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 5.2e-33 146.7 299 35.8
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 6.8e-33 146.4 292 40.1
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 6.8e-33 146.4 292 40.1
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 9.8e-32 142.5 296 39.9
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.3e-31 142.1 596 30.2
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.8e-31 141.0 533 31.1
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.1e-30 139.0 532 31.0
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 3.1e-30 137.5 523 31.4
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 2.0e-29 134.8 550 30.0
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 2.0e-29 134.8 550 30.0
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 2.3e-28 131.3 284 35.6
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 2.9e-28 131.0 547 28.7
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 7.3e-27 126.3 587 29.3
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 9.5e-27 125.9 555 30.1
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 8.0e-26 122.9 566 30.4
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 6.8e-25 119.8 297 32.7
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 3.4e-24 117.5 577 30.2
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 3.4e-24 117.5 378 30.2
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 4.4e-24 117.1 566 30.0
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 9.8e-24 115.9 383 31.3
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 1.7e-23 115.2 572 28.1
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.7e-23 114.0 564 29.3
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 3.2e-22 110.9 395 29.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.0e-21 108.2 514 27.8
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.7e-21 107.8 469 28.4
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.3e-20 105.5 305 31.1
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.1e-19 102.4 349 30.1
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 1.5e-16 92.0 365 30.1
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.0e-16 91.7 552 26.6
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 8.3e-15 86.3 169 33.7
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.4e-14 85.5 516 25.4
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 1.9e-14 85.1 556 26.6
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 2.4e-14 84.7 327 29.4
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 5.4e-14 83.6 324 27.5
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.6e-13 82.0 209 33.0
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.0e-12 79.3 414 25.1
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 2.3e-12 78.2 189 35.4
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 3.9e-12 77.4 562 27.2
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 6.6e-12 76.6 564 24.5
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 7.3e-11 73.2 159 38.4
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 2.1e-10 71.6 148 30.4
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 2.1e-10 71.6 374 27.5
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 2.1e-10 71.6 427 28.3
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.1e-09 69.3 222 32.0
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 3.1e-09 67.8 290 30.3
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 3.1e-09 67.8 342 30.1
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 3.4e-08 64.3 254 33.9
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 2.9e-07 61.2 241 28.2
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 4.9e-07 60.5 233 27.9
Phvul.009G207200 Phaseolus vulgaris HOM05D006756 ORTHO05D001869 4.9e-07 60.5 259 25.5
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 6.4e-07 60.1 280 25.0
C03p44310 Brassica napus HOM05D003044 ORTHO05D001869 6.4e-07 60.1 283 25.1
BolC3t16701H Brassica oleracea HOM05D003044 ORTHO05D001869 6.4e-07 60.1 283 25.1
Sp3g08960 Schrenkiella parvula HOM05D003044 ORTHO05D001869 6.4e-07 60.1 281 24.6
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 1.1e-06 59.3 257 30.4
VMungo1309G0147 Vigna mungo HOM05D006756 ORTHO05D001869 1.1e-06 59.3 269 26.0
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 1.4e-06 58.9 282 24.8
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 1.9e-06 58.5 242 24.8
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 1.9e-06 58.5 280 27.9
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 3.2e-06 57.8 89 40.4
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 4.1e-06 57.4 282 23.8
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 5.4e-06 57.0 252 27.4
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 5.4e-06 57.0 252 27.4
A01p41560 Brassica napus HOM05D003044 ORTHO05D001869 7.1e-06 56.6 279 26.9
Gohir.D06G054000 Gossypium hirsutum HOM05D006756 ORTHO05D001869 7.1e-06 56.6 266 27.4
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 7.1e-06 56.6 286 25.2
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 7.1e-06 56.6 277 25.3
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 7.1e-06 56.6 276 24.6
A03p36670 Brassica napus HOM05D003044 ORTHO05D001869 9.2e-06 56.2 284 25.0
BraA01t04231Z Brassica rapa HOM05D003044 ORTHO05D001869 9.2e-06 56.2 279 27.2
BraA03t12831Z Brassica rapa HOM05D003044 ORTHO05D001869 9.2e-06 56.2 284 25.0
Gorai.010G063000 Gossypium raimondii HOM05D006756 ORTHO05D001869 9.2e-06 56.2 304 26.6
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 9.2e-06 56.2 155 30.3


User provided reference genes

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