Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 0.0e+00 1342.8 656 100.0
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 0.0e+00 1338.2 656 99.5
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 0.0e+00 1288.9 658 95.0
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 0.0e+00 1259.2 657 93.6
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 0.0e+00 1219.5 657 91.0
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1100.9 657 81.3
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 0.0e+00 1088.2 657 80.8
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 0.0e+00 1087.4 657 80.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 0.0e+00 1085.9 657 79.6
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 0.0e+00 1081.2 653 79.8
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1075.5 657 79.5
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 0.0e+00 1075.1 657 79.6
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 9.0e-312 1072.8 659 78.9
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 1.3e-311 1072.4 659 78.3
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.0e-311 1070.8 659 78.9
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 4.0e-311 1070.8 659 78.9
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 9.0e-311 1069.7 657 78.8
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 4.4e-310 1067.4 658 77.7
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.4e-308 1062.4 657 78.2
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.4e-308 1062.4 657 78.4
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 3.2e-308 1061.2 659 78.5
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 5.4e-308 1060.4 657 79.3
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 9.2e-308 1059.7 657 77.8
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.7e-307 1058.1 710 74.5
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 1.0e-306 1056.2 657 77.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.3e-306 1055.8 670 77.2
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 3.9e-306 1054.3 658 78.0
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 5.1e-306 1053.9 657 78.8
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 1.1e-305 1052.7 657 77.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.5e-305 1052.4 657 77.5
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 2.5e-305 1051.6 657 77.8
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 3.3e-305 1051.2 658 77.8
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 4.3e-305 1050.8 657 78.5
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 4.3e-305 1050.8 661 77.2
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 4.7e-304 1047.3 660 77.0
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 8.1e-304 1046.6 676 75.6
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.2e-303 1043.9 657 76.9
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 1.5e-302 1042.3 658 76.9
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 3.4e-302 1041.2 658 76.9
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 3.4e-302 1041.2 657 77.2
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 5.8e-302 1040.4 657 77.5
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.4e-300 1035.8 682 75.2
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 657 77.3
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 2.4e-300 1035.0 659 75.9
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 2.1e-299 1031.9 657 76.6
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 2.7e-299 1031.6 711 73.0
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.0e-298 1029.6 659 75.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 1.3e-298 1029.2 657 77.3
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 1.3e-298 1029.2 657 77.9
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 3.9e-298 1027.7 652 76.8
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 6.6e-298 1026.9 657 75.8
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.1e-297 1026.2 657 77.2
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.6e-296 1022.3 656 75.8
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 3.6e-296 1021.1 657 76.9
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 4.8e-296 1020.8 657 76.3
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 1.1e-295 1019.6 657 76.7
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 9.0e-295 1016.5 702 71.7
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.2e-292 1008.1 659 75.1
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 1.6e-291 1005.7 659 74.2
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.6e-291 1005.7 683 73.4
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.1e-291 1005.4 657 74.0
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 2.1e-291 1005.4 657 75.2
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 4.6e-291 1004.2 686 72.7
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-290 1002.7 657 73.8
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.3e-290 1002.7 657 74.0
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 2.3e-290 1001.9 657 73.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 3.0e-290 1001.5 659 74.4
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 5.1e-290 1000.7 638 77.4
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 6.7e-290 1000.3 657 73.4
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 1.1e-289 999.6 658 75.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-289 999.2 657 73.8
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 1.5e-289 999.2 657 73.8
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.5e-289 999.2 675 73.3
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 3.3e-289 998.0 657 73.5
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 7.4e-289 996.9 663 73.8
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.3e-288 996.1 657 73.1
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.6e-288 995.7 657 73.5
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 2.8e-288 995.0 657 73.5
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 2.4e-287 991.9 611 78.4
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 7.6e-286 986.9 685 71.5
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 1.3e-285 986.1 658 74.5
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.2e-284 981.5 655 74.4
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.6e-283 979.2 657 72.5
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 3.0e-282 974.9 657 72.1
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.5e-281 971.8 663 72.4
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.6e-280 969.1 667 70.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 5.8e-278 960.7 685 70.5
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 4.9e-277 957.6 657 72.1
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 4.9e-277 957.6 660 71.2
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 1.9e-276 955.7 664 70.9
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.0e-274 949.9 664 70.8
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.2e-272 942.2 635 74.8
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.2e-270 936.4 668 68.1
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.2e-270 936.4 604 76.8
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 4.5e-270 934.5 700 67.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 1.3e-269 932.9 668 68.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.9e-269 931.8 684 68.3
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.9e-268 929.1 682 68.9
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.2e-268 927.2 657 70.2
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.7e-267 925.2 600 76.8
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.1e-265 919.8 800 61.0
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.3e-265 917.9 661 68.2
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 3.8e-261 904.8 660 68.0
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.2e-260 901.4 671 67.4
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 3.6e-259 898.3 671 67.7
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.4e-258 896.3 554 79.1
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 5.7e-257 891.0 667 66.0
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 8.2e-256 887.1 572 74.5
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 5.3e-255 884.4 671 65.9
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.3e-253 879.8 572 74.3
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 4.2e-252 874.8 654 70.5
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 2.2e-245 852.4 867 54.6
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.1e-244 850.1 668 63.3
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 9.7e-241 837.0 536 75.4
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 2.1e-235 819.3 506 77.3
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.3e-232 810.1 657 61.5
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 7.7e-230 800.8 477 79.7
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.5e-222 775.4 657 59.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.6e-219 766.5 671 59.9
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 3.1e-218 762.3 501 75.6
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 8.4e-192 674.5 656 55.0
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 4.6e-190 668.7 366 91.0
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.3e-181 640.6 658 52.3
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 5.3e-178 628.6 656 52.7
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.4e-175 619.8 507 64.9
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.2e-175 619.4 641 50.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 1.6e-174 617.1 708 47.0
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-173 614.0 664 52.0
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 2.5e-172 609.8 392 74.0
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 2.0e-169 600.1 337 84.9
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.4e-164 581.6 512 58.4
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.5e-152 542.0 276 93.8
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 5.5e-151 538.9 337 78.0
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 3.1e-146 523.1 672 44.9
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 5.9e-145 518.8 320 77.5
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.8e-138 497.3 654 46.0
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.5e-124 451.1 342 67.8
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.3e-123 445.3 655 41.7
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.5e-108 397.9 309 68.6
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 7.5e-108 395.6 264 74.6
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.7e-107 393.3 657 39.0
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 3.5e-105 386.7 393 55.7
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-92 345.1 236 73.3
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 1.8e-77 294.7 563 36.1
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.1e-74 285.4 438 40.4
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.4e-74 285.0 662 30.4
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 2.1e-73 281.2 231 59.7
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.7e-73 280.8 554 35.0
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.9e-72 276.9 310 51.9
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 1.2e-65 255.4 231 59.3
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.0e-65 253.1 201 61.2
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 1.2e-60 238.8 568 34.7
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.6e-54 218.4 263 47.5
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.3e-46 192.2 139 73.4
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-39 168.3 145 64.8
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 7.7e-36 156.4 228 43.0
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 1.0e-32 146.0 108 66.7
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 1.8e-32 145.2 112 64.3
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 2.9e-27 127.9 126 53.2
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.6e-25 122.1 64 90.6
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 3.0e-24 117.9 80 70.0
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 8.8e-24 116.3 61 78.7
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 4.8e-22 110.5 59 79.7
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 1.7e-19 102.1 137 44.5
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 6.5e-19 100.1 152 39.5
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 3.2e-18 97.8 92 57.6
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 7.2e-18 96.7 69 62.3
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 2.3e-16 91.7 65 69.2
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 8.8e-16 89.7 79 58.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.5e-15 86.7 50 82.0
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 5.3e-13 80.5 50 74.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.0e-12 78.6 44 81.8
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 5.9e-12 77.0 45 86.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.7e-11 75.5 41 82.9
CSS0001762 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D023785 6.5e-11 73.6 51 72.5
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 1.5e-10 72.4 74 55.4
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.6e-09 67.8 48 60.4
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 1.4e-08 65.9 42 71.4
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 2.3e-08 65.1 51 62.7
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 8.8e-08 63.2 37 75.7
QL03p050850 Quercus lobata HOM05D000143 ORTHO05D000072 5.7e-07 60.5 48 66.7


User provided reference genes

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