Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 0.0e+00 1640.6 830 100.0
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 0.0e+00 1583.5 830 96.9
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 0.0e+00 1509.6 830 92.7
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 0.0e+00 1227.6 809 78.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1172.5 821 74.2
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 0.0e+00 1163.7 836 72.5
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.8e-277 958.0 834 60.3
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.0e-274 950.3 834 59.8
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 5.3e-260 901.4 833 57.9
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 1.9e-257 892.9 838 58.5
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.9e-233 813.1 804 55.6
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.2e-230 803.9 813 54.5
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.4e-220 770.4 816 52.2
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.6e-214 749.6 810 53.0
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.6e-208 729.2 796 51.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 7.5e-206 721.5 823 50.3
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 9.9e-198 694.5 797 49.1
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 6.4e-197 691.8 862 47.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 7.3e-193 678.3 809 48.1
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 6.4e-189 665.2 814 47.8
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 5.6e-185 652.1 830 46.4
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.4e-180 637.5 817 45.4
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.4e-180 636.7 754 48.5
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.0e-171 605.5 807 45.5
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.2e-168 595.5 795 43.5
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 8.2e-168 595.1 808 44.1
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.7e-165 587.4 816 43.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 2.2e-165 587.0 863 41.4
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.4e-164 584.3 738 47.2
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.9e-164 583.9 876 41.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 2.5e-164 583.6 831 41.9
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 5.3e-159 565.8 798 43.7
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-158 563.9 845 41.7
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.7e-157 560.8 844 41.7
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 9.4e-156 555.1 822 42.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.1e-155 553.9 838 40.0
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.6e-155 553.1 838 39.9
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.6e-155 552.7 838 39.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 7.9e-155 552.0 815 40.9
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 5.1e-154 549.3 815 41.2
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 5.1e-154 549.3 837 43.0
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.8e-154 548.5 832 41.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.6e-150 537.0 883 38.3
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 2.2e-149 533.9 823 41.2
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-149 533.9 803 40.5
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.2e-149 533.9 734 44.1
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 4.7e-147 526.2 841 40.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 6.1e-147 525.8 828 40.8
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 7.9e-147 525.4 825 40.4
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.8e-146 524.2 822 39.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 3.3e-145 520.0 832 39.8
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.4e-145 519.6 832 38.8
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 7.4e-145 518.8 834 39.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 2.8e-144 516.9 827 39.5
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 3.2e-140 503.4 816 40.4
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.2e-140 503.4 830 39.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 4.2e-140 503.1 847 37.8
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.4e-138 498.0 811 37.9
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.3e-138 497.3 829 38.5
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.0e-138 496.9 810 37.9
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 3.9e-138 496.5 830 37.7
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 2.0e-137 494.2 826 38.7
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 5.7e-137 492.7 819 38.7
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 4.8e-136 489.6 921 36.2
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.8e-136 489.6 844 37.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 2.6e-134 483.8 811 39.1
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.2e-133 480.7 958 34.2
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 3.8e-133 479.9 1010 33.2
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 8.5e-133 478.8 940 35.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.5e-132 478.0 816 36.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 5.5e-132 476.1 813 38.1
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 7.2e-132 475.7 828 37.2
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.4e-130 471.5 831 37.9
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.8e-130 471.1 852 37.9
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 3.0e-130 470.3 803 39.6
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 1.3e-128 464.9 723 42.5
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 3.7e-128 463.4 866 37.3
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.3e-128 462.6 926 34.9
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.0e-126 457.6 841 35.6
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.5e-126 456.8 839 35.6
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 5.2e-122 443.0 848 36.2
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 4.4e-121 439.9 833 34.5
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 2.8e-120 437.2 810 34.8
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.5e-116 422.9 563 42.6
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 9.5e-116 422.2 896 34.8
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 8.0e-115 419.1 958 33.0
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 2.3e-114 417.5 815 34.4
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.3e-112 411.8 824 34.2
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 6.3e-112 409.5 658 37.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 1.3e-109 401.7 832 33.9
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-109 401.4 799 35.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.6e-109 399.4 843 32.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 2.8e-107 394.0 812 32.6
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 3.1e-106 390.6 813 32.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.2e-103 380.6 806 33.3
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 2.0e-97 361.3 787 32.8
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.6e-97 360.9 495 41.6
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.4e-95 354.4 615 38.9
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-87 327.8 864 30.2
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.7e-85 321.6 610 37.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.7e-85 321.6 851 29.6
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.8e-82 309.7 614 34.0
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.3e-77 295.4 572 35.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.9e-76 291.6 799 30.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 1.6e-75 288.5 652 33.9
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 1.6e-75 288.5 462 38.5
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.1e-74 285.8 722 33.1
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 2.4e-74 284.6 522 36.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.9e-71 275.0 440 38.9
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 9.3e-71 272.7 470 36.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.3e-69 268.1 445 38.2
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 9.6e-68 262.7 472 36.9
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.3e-67 262.3 443 36.8
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.4e-66 258.8 448 37.3
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.2e-65 255.8 394 40.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 1.5e-65 255.4 440 37.5
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 1.5e-65 255.4 440 37.5
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.6e-65 254.6 802 26.9
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 5.8e-65 253.4 469 35.8
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.9e-64 250.4 356 42.4
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 8.4e-64 249.6 440 37.3
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-63 249.2 448 36.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 1.4e-63 248.8 440 37.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 3.2e-63 247.7 442 36.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 7.1e-63 246.5 833 26.7
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 1.6e-62 245.4 440 37.0
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 4.6e-62 243.8 525 34.9
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 3.0e-61 241.1 606 33.0
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 2.5e-60 238.0 800 28.6
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.1e-59 235.0 553 34.2
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 2.0e-57 228.4 474 33.5
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.0e-57 228.4 503 32.8
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.9e-56 224.6 540 31.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-55 222.2 442 36.7
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.9e-55 221.9 492 31.9
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.9e-55 221.9 492 31.9
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 1.1e-52 212.6 459 34.4
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 4.3e-52 210.7 495 31.5
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.8e-51 208.0 844 25.2
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 6.5e-48 196.8 460 33.3
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.9e-47 195.3 288 42.4
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.6e-43 182.2 502 28.3
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.0e-41 175.3 463 27.9
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 1.1e-36 159.5 105 69.5
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 5.3e-34 150.6 846 22.5
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.0e-33 148.7 238 40.3
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.1e-31 142.9 135 58.5
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 7.9e-30 136.7 155 39.4
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 3.0e-29 134.8 100 59.0
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 4.1e-26 124.4 190 42.6
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 1.1e-23 116.3 182 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.6e-22 111.3 740 20.9
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 4.7e-22 110.9 389 28.5
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 4.4e-20 104.4 236 29.7
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-16 92.8 101 47.5
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 8.0e-14 83.6 98 36.7
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-10 72.8 174 28.2
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 9.1e-10 70.1 84 44.0
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 9.1e-10 70.1 73 42.5
Oeu005515.1 Olea europaea HOM05D004295 ORTHO05D004901 1.6e-09 69.3 98 45.9
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-08 63.5 82 34.1
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 2.5e-07 62.0 64 43.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 3.2e-07 61.6 50 60.0


User provided reference genes

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