Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.9e-93 344.0 175 100.0
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.6e-86 322.8 175 95.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 4.1e-85 318.2 164 98.8
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.2e-55 220.3 180 63.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 8.3e-54 214.2 165 67.3
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.1e-53 213.8 187 61.0
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 1.8e-53 213.0 186 61.3
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 2.4e-53 212.6 175 64.6
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.1e-53 212.2 181 64.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 4.1e-53 211.8 181 63.5
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 4.1e-53 211.8 184 60.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 5.4e-53 211.5 181 60.8
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 5.4e-53 211.5 179 62.0
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 7.0e-53 211.1 185 59.5
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 7.0e-53 211.1 181 64.1
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 9.1e-53 210.7 181 60.8
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 9.1e-53 210.7 185 60.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-52 210.3 181 59.7
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.0e-52 209.5 181 59.7
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 2.7e-52 209.1 186 59.1
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.7e-52 209.1 181 59.7
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 3.5e-52 208.8 185 60.5
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.5e-52 208.4 182 59.9
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 4.5e-52 208.4 182 59.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 4.5e-52 208.4 181 62.4
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 7.7e-52 207.6 181 61.9
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.7e-52 207.6 181 61.9
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.7e-52 207.6 181 61.9
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.0e-51 207.2 161 64.0
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.3e-51 206.8 176 61.4
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.3e-51 206.8 189 58.2
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.7e-51 206.5 187 61.0
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.7e-51 206.5 180 61.7
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.7e-51 206.5 184 59.8
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 2.2e-51 206.1 142 70.4
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 2.2e-51 206.1 142 70.4
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.2e-51 206.1 183 60.1
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 2.9e-51 205.7 181 60.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.8e-51 205.3 162 66.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.8e-51 205.3 186 59.1
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 6.5e-51 204.5 185 59.5
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 8.5e-51 204.1 185 58.4
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.1e-50 203.8 186 58.6
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.1e-50 203.8 185 59.5
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.5e-50 203.4 163 63.8
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.5e-50 203.4 147 68.0
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.5e-50 203.4 178 60.1
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.5e-50 203.4 201 54.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.5e-50 203.4 135 73.3
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.5e-50 203.4 177 59.9
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-50 203.0 164 64.0
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-50 203.0 164 64.0
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-50 203.0 164 64.0
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-50 203.0 164 64.0
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.9e-50 203.0 179 62.6
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 1.9e-50 203.0 180 58.9
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 2.5e-50 202.6 163 63.2
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 2.5e-50 202.6 174 62.6
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.5e-50 202.6 187 58.8
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-50 202.2 164 63.4
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-50 202.2 164 63.4
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.2e-50 202.2 178 59.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 4.2e-50 201.8 142 69.0
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.2e-50 201.8 175 60.0
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.5e-50 201.4 174 62.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 7.2e-50 201.1 174 60.3
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 7.2e-50 201.1 175 60.0
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 9.4e-50 200.7 145 66.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.2e-49 200.3 187 58.3
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.6e-49 199.9 157 65.0
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.6e-49 199.9 135 73.3
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 2.1e-49 199.5 180 60.6
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.1e-49 199.5 174 61.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-49 199.5 171 60.2
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 2.7e-49 199.1 175 60.6
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.6e-49 198.7 174 62.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 3.6e-49 198.7 174 61.5
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 3.6e-49 198.7 185 57.3
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 4.7e-49 198.4 158 63.3
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.1e-49 198.0 187 57.8
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 8.0e-49 197.6 172 62.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 8.0e-49 197.6 187 60.4
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 8.0e-49 197.6 177 60.5
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 8.0e-49 197.6 166 61.4
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 8.0e-49 197.6 179 62.6
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.0e-48 197.2 181 57.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.0e-48 197.2 125 76.0
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.4e-48 196.8 174 60.9
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.8e-48 196.4 186 58.1
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.8e-48 196.4 187 57.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.0e-48 195.7 181 59.7
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 3.0e-48 195.7 184 57.6
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 4.0e-48 195.3 183 59.0
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 6.8e-48 194.5 163 62.0
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 6.8e-48 194.5 177 58.2
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.8e-48 194.5 189 56.1
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 8.8e-48 194.1 180 57.8
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 8.8e-48 194.1 178 58.4
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 8.8e-48 194.1 178 59.6
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 8.8e-48 194.1 183 55.2
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 1.5e-47 193.4 163 61.3
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.5e-47 193.4 122 75.4
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.0e-47 193.0 182 56.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 2.0e-47 193.0 177 59.3
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.6e-47 192.6 127 73.2
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.6e-47 192.6 172 57.6
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 3.4e-47 192.2 124 77.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 3.4e-47 192.2 124 77.4
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 3.4e-47 192.2 224 50.9
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.4e-47 192.2 177 60.5
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 4.4e-47 191.8 124 74.2
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 7.5e-47 191.0 184 57.6
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 9.8e-47 190.7 124 75.8
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.3e-46 190.3 137 68.6
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.7e-46 189.9 123 74.0
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.7e-46 189.9 131 70.2
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 2.2e-46 189.5 124 75.8
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 4.9e-46 188.3 126 71.4
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 4.9e-46 188.3 124 72.6
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 4.9e-46 188.3 185 55.7
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 6.3e-46 188.0 178 59.0
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.1e-45 187.2 126 73.0
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.4e-45 186.0 191 52.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 4.1e-45 185.3 179 58.1
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 9.1e-45 184.1 169 58.0
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 9.1e-45 184.1 184 54.9
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 5.9e-44 181.4 150 60.7
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 5.9e-44 181.4 144 66.7
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 5.9e-44 181.4 171 57.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 7.7e-44 181.0 206 50.5
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.3e-43 180.3 164 61.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.3e-43 180.3 144 66.0
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.3e-43 180.3 142 64.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.3e-43 180.3 180 54.4
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.1e-42 177.2 167 57.5
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.3e-42 175.6 144 63.9
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 3.3e-42 175.6 126 65.9
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.0e-41 171.0 142 63.4
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-40 170.2 129 67.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.3e-40 169.5 185 50.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 6.8e-40 167.9 142 64.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.3e-38 163.7 180 52.2
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 6.4e-38 161.4 184 52.2
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.4e-37 160.2 123 63.4
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.6e-36 156.8 149 57.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 6.6e-35 151.4 145 57.2
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 6.6e-35 151.4 123 61.0
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.5e-34 150.2 122 58.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.9e-34 149.8 145 57.2
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 3.3e-34 149.1 145 56.6
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 7.3e-34 147.9 145 56.6
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 7.5e-31 137.9 133 56.4
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.4e-30 134.8 103 61.2
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.3e-30 134.4 140 51.4
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.6e-28 128.6 95 64.2
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 6.6e-27 124.8 92 66.3
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-26 123.2 90 66.7
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.9e-26 123.2 85 69.4
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 9.5e-26 120.9 132 53.0
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.1e-21 104.8 66 75.8
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.6e-20 102.1 66 75.8
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.0e-19 100.9 108 54.6
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-19 100.1 66 74.2
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 3.0e-19 99.4 118 51.7
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 3.1e-16 89.4 66 65.2
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 6.8e-16 88.2 66 63.6
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 7.6e-15 84.7 128 39.8
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.3e-14 84.0 58 65.5
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.3e-14 84.0 57 68.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.2e-14 83.2 61 62.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 2.9e-14 82.8 57 66.7
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.7e-14 82.4 45 82.2
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.2e-12 77.4 67 52.2
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 8.1e-09 64.7 38 76.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.8e-08 61.6 37 73.0
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.2e-07 60.8 37 73.0
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.7e-06 57.0 37 67.6
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 2.2e-06 56.6 58 51.7


User provided reference genes

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