Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 6.8e-190 667.2 333 100.0
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 2.1e-183 645.6 333 96.7
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.4e-171 605.5 334 90.4
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.7e-145 519.6 338 75.1
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.3e-136 488.8 350 70.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.1e-118 430.6 311 68.8
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 9.7e-112 407.5 293 63.8
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 9.7e-112 407.5 293 63.8
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 9.7e-112 407.5 293 63.8
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 5.9e-109 398.3 220 80.9
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.3e-108 397.1 304 61.8
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 3.8e-108 395.6 289 63.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 3.8e-108 395.6 292 62.3
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 8.5e-108 394.4 297 62.3
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 1.4e-107 393.7 271 66.1
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 3.2e-107 392.5 291 63.6
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.2e-107 392.5 281 64.4
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.2e-107 392.5 262 67.2
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.2e-107 392.5 262 67.2
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.2e-107 392.1 271 65.7
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 4.2e-107 392.1 265 67.5
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 7.2e-107 391.3 335 57.6
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.2e-106 390.6 271 66.1
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.6e-106 390.2 236 71.2
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 2.1e-106 389.8 231 74.0
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 3.6e-106 389.0 271 66.1
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 1.4e-105 387.1 254 67.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.4e-105 387.1 296 60.5
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 6.7e-105 384.8 280 64.3
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 8.8e-105 384.4 297 59.9
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.1e-104 384.0 307 60.6
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 2.6e-104 382.9 301 58.5
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.6e-104 382.9 295 62.0
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 4.4e-104 382.1 289 62.3
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 4.4e-104 382.1 274 63.5
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 2.2e-103 379.8 279 63.8
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.8e-103 379.4 243 68.3
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 4.8e-103 378.6 289 60.2
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 1.1e-102 377.5 285 61.8
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 1.4e-102 377.1 231 70.6
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 2.4e-102 376.3 269 63.6
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.4e-102 376.3 230 69.6
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 7.0e-102 374.8 232 70.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.0e-101 373.2 264 64.4
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.6e-101 372.9 281 61.9
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 3.5e-101 372.5 256 65.6
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 3.5e-101 372.5 285 60.0
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 3.5e-101 372.5 331 57.4
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 4.5e-101 372.1 285 58.6
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 7.7e-101 371.3 304 57.9
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 7.7e-101 371.3 303 58.1
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.0e-100 370.9 264 62.9
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 1.0e-100 370.9 235 68.9
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.0e-100 370.9 266 62.8
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.7e-100 370.2 307 58.0
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.7e-100 370.2 259 64.5
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.9e-100 369.4 281 61.2
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 5.0e-100 368.6 303 58.1
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 5.0e-100 368.6 291 57.4
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 1.1e-99 367.5 282 60.3
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.1e-99 367.5 238 66.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.4e-99 367.1 231 68.8
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.4e-99 367.1 286 60.5
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 3.2e-99 365.9 264 63.6
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 9.4e-99 364.4 301 57.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-98 364.0 287 59.2
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 2.7e-98 362.8 269 58.7
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.7e-98 362.8 236 65.3
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 2.7e-98 362.8 230 67.4
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 3.6e-98 362.5 278 59.0
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 3.6e-98 362.5 233 66.5
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 4.7e-98 362.1 236 65.3
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 6.1e-98 361.7 276 61.2
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 8.0e-98 361.3 236 64.4
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 8.0e-98 361.3 270 60.7
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 8.0e-98 361.3 290 60.0
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.0e-97 360.9 301 55.1
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 1.4e-97 360.5 301 56.5
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 1.8e-97 360.1 339 53.1
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 2.3e-97 359.8 285 60.7
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 3.9e-97 359.0 289 57.1
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 5.2e-97 358.6 298 55.7
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 5.2e-97 358.6 298 55.7
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 5.2e-97 358.6 298 55.7
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 8.8e-97 357.8 230 66.5
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.5e-96 357.1 236 63.6
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 5.7e-96 355.1 298 56.4
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 7.4e-96 354.8 230 68.7
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 1.3e-95 354.0 249 64.3
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.3e-95 354.0 304 55.3
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.7e-95 353.6 303 58.1
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 3.1e-94 349.4 298 56.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 4.1e-94 349.0 226 66.4
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.6e-93 346.3 229 65.1
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 7.7e-93 344.7 268 58.2
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 1.3e-92 344.0 243 63.0
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 6.5e-92 341.7 297 55.2
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 2.5e-91 339.7 297 55.6
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.6e-90 337.0 233 62.7
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 4.0e-89 332.4 233 64.8
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 1.2e-88 330.9 263 58.2
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 4.4e-88 328.9 219 65.3
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 5.7e-88 328.6 236 58.5
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 7.5e-88 328.2 233 61.8
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 9.7e-88 327.8 269 54.3
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 4.8e-87 325.5 233 62.2
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.8e-86 323.6 249 56.2
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 3.1e-86 322.8 222 63.5
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.1e-86 322.4 268 53.4
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 7.0e-86 321.6 298 51.0
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 9.1e-86 321.2 236 57.2
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.6e-85 320.5 243 56.0
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.7e-85 319.7 256 55.5
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 3.5e-85 319.3 194 70.1
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.9e-84 316.2 222 63.1
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 2.5e-83 313.2 251 57.0
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.3e-81 306.6 253 54.5
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.6e-80 303.1 295 50.8
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.4e-80 302.8 267 51.7
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 9.8e-80 301.2 296 46.6
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 9.8e-80 301.2 209 64.1
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 2.2e-79 300.1 233 54.9
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.7e-79 299.3 223 57.0
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 8.3e-79 298.1 253 50.6
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 8.3e-79 298.1 228 59.2
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 1.4e-78 297.4 251 53.4
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-78 297.0 299 47.2
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 2.4e-78 296.6 296 47.6
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.4e-78 295.4 224 55.4
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 9.1e-78 294.7 278 47.8
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 2.5e-75 286.6 200 63.0
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 4.2e-75 285.8 251 52.6
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 4.2e-75 285.8 251 52.6
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 4.2e-75 285.8 251 52.6
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 4.2e-75 285.8 251 52.6
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 9.5e-75 284.6 251 52.2
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-73 280.8 251 51.8
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.3e-71 274.2 315 44.4
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 4.9e-71 272.3 205 61.5
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 8.3e-71 271.6 239 51.0
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.0e-68 264.6 282 48.6
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 1.7e-68 263.8 158 71.5
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 1.9e-67 260.4 219 54.3
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 1.9e-67 260.4 229 52.4
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 1.2e-66 257.7 258 48.1
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 3.1e-65 253.1 199 55.8
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 4.0e-65 252.7 271 45.4
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 6.8e-65 251.9 229 48.0
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 4.4e-64 249.2 268 48.9
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 5.8e-64 248.8 245 46.9
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 9.8e-64 248.1 212 54.7
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.3e-60 237.7 230 46.1
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.7e-60 237.3 226 49.1
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.9e-60 236.1 263 47.5
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.1e-59 234.6 236 47.9
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.1e-59 234.6 228 45.6
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 2.1e-58 230.3 249 41.8
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.4e-57 227.6 171 59.6
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 7.5e-56 221.9 171 61.4
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 9.8e-56 221.5 223 44.8
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.7e-55 220.7 227 46.3
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 3.2e-54 216.5 195 49.7
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.3e-52 210.3 263 40.3
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.3e-49 200.3 130 66.9
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 3.7e-47 193.0 145 60.0
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 3.7e-47 193.0 152 57.9
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.4e-46 191.0 319 36.1
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 2.1e-45 187.2 239 43.5
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 4.6e-45 186.0 209 45.5
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 6.0e-45 185.7 237 37.1
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 4.2e-38 162.9 97 68.0
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.4e-38 162.5 109 64.2
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 5.1e-28 129.4 87 58.6
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-27 127.1 92 58.7
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 5.8e-16 89.4 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.2e-13 81.6 74 51.4
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-12 78.2 96 42.7
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 6.5e-07 59.3 43 58.1


User provided reference genes

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