Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.2e-244 848.6 445 100.0
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.7e-242 841.6 445 99.3
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 4.3e-240 834.3 445 98.0
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.0e-217 758.4 450 90.0
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.9e-211 739.2 443 87.1
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.1e-186 656.0 448 78.3
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.2e-183 646.0 451 76.3
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.4e-182 643.3 461 74.8
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 9.1e-182 640.6 454 75.6
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.9e-181 637.9 457 74.8
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.3e-180 636.7 453 76.2
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.3e-180 636.7 453 76.8
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 6.5e-180 634.4 454 75.6
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 8.5e-180 634.0 462 74.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.1e-179 633.6 446 75.6
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.5e-179 632.5 456 75.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 4.2e-179 631.7 455 74.3
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 7.2e-179 630.9 446 75.1
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.2e-178 630.2 457 74.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-178 630.2 447 74.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.6e-178 629.8 421 77.9
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.6e-178 629.8 456 74.8
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 2.1e-178 629.4 448 74.3
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 6.1e-178 627.9 455 74.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.0e-177 627.1 456 73.2
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.8e-177 626.3 453 73.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.0e-177 625.5 461 72.9
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 6.7e-177 624.4 454 75.3
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.5e-176 623.2 455 73.2
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.7e-175 619.8 454 73.6
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.4e-174 616.7 452 74.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 3.1e-174 615.5 451 72.5
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 5.3e-174 614.8 458 73.1
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 7.0e-174 614.4 458 73.1
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.6e-173 613.2 462 72.5
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.6e-173 613.2 455 74.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.0e-173 612.8 460 72.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 2.6e-173 612.5 455 72.5
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.6e-173 612.5 442 74.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.0e-172 610.5 448 72.5
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.1e-171 607.1 457 71.6
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.5e-171 606.7 454 73.6
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 1.9e-171 606.3 452 73.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.2e-171 605.1 455 74.1
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 7.2e-171 604.4 452 72.8
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 9.4e-171 604.0 452 72.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 9.4e-171 604.0 455 73.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.2e-170 603.6 457 73.7
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.7e-170 602.4 417 75.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 8.0e-170 600.9 417 75.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.8e-169 599.7 457 71.3
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.0e-169 599.0 441 72.8
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.2e-168 597.0 445 71.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.5e-168 596.7 421 75.1
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 2.0e-168 596.3 455 73.0
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.6e-168 595.9 445 72.1
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 7.5e-168 594.3 449 70.4
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.2e-167 592.8 445 71.0
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.1e-166 590.5 456 70.6
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 5.3e-166 588.2 460 70.9
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 5.3e-166 588.2 453 70.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 3.5e-165 585.5 447 70.5
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 3.5e-165 585.5 455 69.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 4.5e-165 585.1 450 70.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 7.7e-165 584.3 449 69.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-164 583.9 454 70.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.0e-164 583.9 454 70.0
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.3e-164 583.6 451 69.2
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.1e-163 580.5 458 69.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 3.2e-163 578.9 452 71.2
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 7.2e-163 577.8 362 80.4
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 9.4e-163 577.4 451 68.5
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.6e-162 576.6 448 68.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.6e-162 576.6 452 68.4
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.1e-162 576.2 455 69.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.6e-162 575.5 462 68.2
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.7e-162 575.1 452 68.6
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 1.4e-161 573.5 452 68.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.8e-161 573.2 448 68.1
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 3.0e-161 572.4 451 68.3
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.3e-159 567.0 454 67.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.8e-159 565.8 452 68.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.8e-159 565.8 452 68.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.8e-159 565.8 452 68.1
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 4.8e-159 565.1 450 68.0
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 4.8e-159 565.1 445 67.9
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.4e-158 563.5 445 67.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.4e-158 563.5 320 91.6
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.4e-158 562.8 445 67.6
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 4.1e-158 562.0 445 67.6
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 5.4e-158 561.6 448 68.5
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 9.1e-158 560.8 445 67.9
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.3e-156 556.2 452 67.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.8e-156 555.4 456 67.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.8e-156 555.4 456 67.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 3.3e-155 552.4 341 80.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.6e-154 548.9 457 67.4
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 9.8e-152 540.8 400 73.0
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 6.3e-151 538.1 362 76.8
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.4e-150 537.0 365 74.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.9e-143 512.7 454 63.7
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.3e-140 503.1 282 93.3
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 6.2e-138 495.0 451 62.1
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.8e-136 487.6 451 61.0
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 7.0e-134 481.5 311 79.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.9e-127 458.8 290 80.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 1.4e-126 457.2 307 76.9
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 6.8e-121 438.3 410 58.0
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.6e-120 436.4 376 62.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.9e-119 433.0 371 61.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.4e-118 430.6 368 60.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 7.1e-118 428.3 373 60.9
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.3e-116 424.1 295 73.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.3e-114 417.5 368 58.7
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 2.1e-114 416.8 280 74.3
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.6e-106 389.4 377 57.0
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.8e-103 379.4 368 56.8
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 4.2e-102 375.9 323 62.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 7.9e-101 371.7 279 71.3
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.8e-97 360.5 377 54.4
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.2e-96 357.8 341 58.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.5e-94 350.1 355 53.2
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 5.5e-94 349.0 378 52.1
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.1e-86 324.7 368 52.7
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.3e-84 317.0 383 48.0
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-79 300.4 243 65.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.8e-68 264.2 332 49.1
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 8.0e-53 212.2 150 72.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 9.8e-51 205.3 345 40.3
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 8.3e-42 175.6 222 47.7
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.1e-41 173.7 164 54.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.6e-39 166.0 115 73.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-33 147.5 88 78.4
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.3e-31 141.7 175 46.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-31 141.4 115 64.3
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-31 139.8 171 48.5
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 4.1e-25 120.2 73 87.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.2e-20 103.2 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.7e-16 90.9 102 50.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.5e-14 84.3 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.1e-09 67.0 87 51.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 6.6e-07 59.7 141 34.0


User provided reference genes

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