Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 2098.6 1050 100.0
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 2042.3 1050 97.0
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1890.9 1051 89.9
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1868.6 1051 89.4
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1771.5 1051 85.1
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1555.8 1055 73.6
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1543.5 1057 74.0
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1538.5 1055 72.2
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1533.5 1055 72.2
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1531.9 1055 72.6
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1529.2 1055 71.9
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1528.1 1055 72.6
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1526.9 1058 71.9
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1521.5 1055 72.8
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1520.4 1044 72.8
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1055 71.9
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1056 71.6
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1514.2 1052 71.9
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1511.1 1059 71.7
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1509.2 1057 70.8
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1054 70.8
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1058 71.4
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1060 71.6
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1499.2 1055 71.3
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1497.3 1054 71.7
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1494.6 1058 71.3
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1493.4 1052 69.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1492.6 1055 70.8
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1484.9 1120 66.8
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1481.8 1053 70.3
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1051 71.6
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1478.8 1053 70.0
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1475.7 1146 66.2
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1055 70.6
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1471.1 1054 69.2
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1470.3 1055 70.4
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1469.9 1051 69.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1468.0 1054 69.8
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1054 70.3
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1467.2 1059 70.2
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1466.4 1062 70.2
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1465.7 1055 70.1
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1464.1 1055 69.8
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1461.8 1062 69.6
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1461.0 1055 69.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1460.7 1062 69.6
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1460.7 1055 70.0
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1458.4 1037 70.7
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1457.6 1055 69.8
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1456.8 1056 69.7
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1073 68.7
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1453.0 1073 68.7
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1451.4 1057 68.7
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1053 69.3
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1039 70.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1444.9 960 75.4
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1054 68.9
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1061 69.3
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1442.2 1054 68.4
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1441.4 1056 69.4
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1441.0 1055 68.3
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1441.0 1057 69.5
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1438.3 1139 64.9
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1437.2 1057 67.8
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1436.4 1053 68.7
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1436.0 1055 68.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1434.1 1061 69.4
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1431.4 1053 68.3
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1431.0 1054 68.7
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1427.2 1132 65.5
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1425.2 1055 67.8
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1416.4 1056 67.2
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1415.2 1055 67.1
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1414.4 1055 67.0
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1394.8 1056 66.0
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1388.2 1056 66.5
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1385.2 1094 65.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1377.1 1065 65.8
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1369.8 1060 65.6
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1369.0 1054 66.6
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1354.7 1058 64.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1354.0 1062 64.5
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1352.8 947 72.8
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1346.6 1262 56.3
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1343.9 1063 64.9
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1343.2 978 70.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1322.0 845 77.5
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1314.3 1050 63.9
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1278.1 855 74.4
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1219.5 851 71.8
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1183.3 801 73.4
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 0.0e+00 1168.7 650 90.3
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1124.0 789 70.8
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1102.8 959 61.3
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1083.2 1077 54.2
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.6e-304 1047.3 518 98.3
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.9e-303 1045.4 1056 53.1
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 2.0e-296 1022.7 1067 50.8
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 4.6e-293 1011.5 789 65.3
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 8.8e-268 927.5 781 61.2
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 9.8e-235 817.8 656 62.7
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 3.1e-233 812.8 516 74.4
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.9e-231 806.2 951 49.6
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.9e-218 763.1 403 94.5
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 8.3e-210 734.9 447 77.2
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.9e-209 733.8 447 77.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.2e-208 731.1 469 72.9
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 5.1e-207 725.7 450 76.2
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.5e-203 714.1 471 72.4
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.2e-201 706.4 498 68.5
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.7e-199 700.7 447 72.9
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.1e-198 698.0 456 71.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 4.3e-198 696.0 450 74.2
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 9.6e-198 694.9 695 54.5
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 2.3e-191 673.7 454 69.8
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 4.5e-187 659.4 450 70.9
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 3.2e-185 653.3 482 66.2
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 6.1e-168 595.9 450 65.6
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 6.7e-167 592.4 458 64.4
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.9e-161 574.3 447 62.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.9e-161 574.3 428 67.3
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 2.5e-158 563.9 400 72.0
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 5.1e-151 539.7 366 71.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 8.2e-149 532.3 364 70.9
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.3e-146 525.0 317 82.6
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.3e-142 510.4 271 93.4
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 2.8e-141 507.3 613 49.1
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 8.0e-136 489.2 1100 31.4
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 4.2e-121 440.3 243 90.5
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.2e-120 438.7 266 78.2
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 4.0e-119 433.7 249 84.7
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.3e-114 418.7 286 73.8
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.5e-102 378.6 238 78.2
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 3.4e-102 377.5 213 85.9
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 3.7e-101 374.0 266 71.1
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 2.8e-96 357.8 205 89.8
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.5e-73 282.3 155 86.5
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 9.0e-63 246.5 210 63.3
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 8.7e-58 229.9 287 45.6
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 3.0e-50 204.9 174 68.4
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.0e-42 179.9 121 69.4
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 9.7e-41 173.3 156 57.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 8.2e-40 170.2 155 60.0
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.9e-37 161.8 177 53.1
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.4e-31 142.9 138 55.1
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 5.3e-31 141.0 105 67.6
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.2e-30 139.8 89 77.5
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.6e-30 139.4 138 54.3
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 2.6e-30 138.7 84 82.1
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 4.5e-30 137.9 110 62.7
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 9.4e-28 130.2 85 68.2
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 4.7e-27 127.9 83 67.5
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 9.7e-25 120.2 62 93.5
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 2.2e-24 119.0 97 61.9
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 3.7e-24 118.2 96 58.3
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.6e-22 112.8 55 92.7
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 2.0e-22 112.5 96 56.2
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.6e-17 95.5 58 63.8
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 7.0e-15 87.4 83 49.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.8e-13 81.6 72 59.7
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.1e-12 80.1 56 62.5
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 3.6e-11 75.1 44 77.3
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.8e-10 72.8 74 52.7
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 3.0e-10 72.0 78 52.6
Solyc07g017660.3 Solanum lycopersicum HOM05D004198 ORTHO05D392768 8.8e-10 70.5 42 76.2
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.5e-09 69.7 72 52.8
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 1.5e-09 69.7 41 78.0
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.3e-08 66.6 53 66.0
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 2.4e-07 62.4 48 68.8


User provided reference genes

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