Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 4.3e-170 601.3 312 100.0
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 3.7e-166 588.2 313 98.1
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 3.1e-160 568.5 313 95.2
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.0e-136 487.3 315 81.9
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.6e-130 467.2 344 73.8
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 2.5e-117 426.0 317 73.8
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 2.6e-106 389.4 304 67.4
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.8e-104 383.3 314 65.9
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.4e-104 382.9 337 63.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 3.8e-102 375.6 271 71.2
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 5.5e-101 371.7 317 64.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 3.0e-99 365.9 309 65.4
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 6.7e-99 364.8 328 63.1
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 8.8e-99 364.4 237 76.4
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.0e-98 363.2 326 62.6
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 3.3e-98 362.5 324 63.6
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 4.4e-98 362.1 309 65.4
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 1.3e-97 360.5 249 72.7
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.3e-97 360.5 275 67.3
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.8e-97 359.4 287 67.2
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.8e-97 359.4 327 62.7
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 4.8e-97 358.6 289 64.4
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 4.8e-97 358.6 312 61.9
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 4.8e-97 358.6 247 74.5
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.8e-96 356.7 318 62.9
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 3.1e-96 355.9 307 63.2
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 3.1e-96 355.9 278 67.3
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 4.1e-96 355.5 266 68.0
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.1e-96 354.4 309 64.4
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 1.6e-95 353.6 299 63.5
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 4.5e-95 352.1 325 62.8
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 5.9e-95 351.7 321 63.6
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 5.9e-95 351.7 321 63.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 7.7e-95 351.3 321 62.6
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 2.2e-94 349.7 314 64.6
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 2.9e-94 349.4 314 62.1
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 3.8e-94 349.0 289 67.1
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 6.5e-94 348.2 275 65.5
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 8.5e-94 347.8 322 62.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.1e-93 347.4 290 65.9
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.1e-93 347.4 288 63.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.9e-93 346.7 245 72.7
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.9e-93 346.7 289 64.4
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 5.5e-93 345.1 288 64.6
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 9.4e-93 344.4 275 64.7
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 9.4e-93 344.4 299 62.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-92 344.0 281 66.2
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 1.2e-92 344.0 309 65.0
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.1e-92 343.2 319 61.1
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 2.1e-92 343.2 287 62.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 4.7e-92 342.0 308 61.0
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 6.1e-92 341.7 263 65.8
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.0e-91 340.9 301 63.8
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.4e-91 340.5 261 67.8
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 1.4e-91 340.5 303 62.4
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 2.3e-91 339.7 295 61.4
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 2.3e-91 339.7 232 71.6
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.0e-91 339.3 290 63.1
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 4.0e-91 339.0 301 63.1
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.0e-90 336.7 304 61.5
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.0e-90 336.7 273 65.6
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 3.4e-90 335.9 290 62.8
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 9.8e-90 334.3 275 64.7
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 9.8e-90 334.3 260 66.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 9.8e-90 334.3 312 59.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-89 334.0 290 61.4
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.7e-89 333.6 306 58.2
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.8e-89 332.8 290 61.0
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 4.8e-89 332.0 273 64.8
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 6.3e-89 331.6 322 59.3
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.4e-88 330.5 270 64.4
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-88 330.1 265 64.9
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.8e-88 330.1 318 57.9
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 3.1e-88 329.3 239 72.0
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 5.4e-88 328.6 242 69.4
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 9.1e-88 327.8 325 58.5
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 1.2e-87 327.4 273 64.8
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.6e-87 327.0 302 60.3
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.5e-87 325.9 278 66.2
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 4.5e-87 325.5 296 62.2
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 5.9e-87 325.1 332 58.4
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.0e-86 324.3 300 59.7
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.7e-86 323.6 289 60.2
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 2.2e-86 323.2 302 59.9
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.9e-86 322.8 284 63.4
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.5e-86 321.6 252 67.9
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 6.5e-86 321.6 312 58.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 3.6e-84 315.8 295 59.3
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 6.1e-84 315.1 322 56.5
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.2e-82 310.8 307 57.3
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 4.4e-82 308.9 309 57.6
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 7.5e-82 308.1 223 70.9
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.7e-81 307.0 237 67.1
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.4e-80 303.9 312 56.1
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 1.8e-80 303.5 248 64.5
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.4e-80 303.1 314 55.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.0e-78 297.7 195 80.0
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 5.6e-77 292.0 307 55.7
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 6.1e-76 288.5 219 67.1
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 6.1e-76 288.5 235 65.5
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.0e-71 273.5 249 58.2
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 3.5e-71 272.7 219 65.3
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 7.3e-69 265.0 310 51.0
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.1e-67 259.6 235 60.4
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-66 256.1 235 59.6
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 7.5e-66 255.0 209 64.6
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 9.8e-66 254.6 223 65.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 8.3e-65 251.5 193 66.3
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 8.3e-65 251.5 193 66.3
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 2.0e-63 246.9 220 59.1
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.5e-63 246.1 224 63.4
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 3.0e-62 243.0 225 56.4
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.5e-61 240.7 230 60.0
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 3.3e-61 239.6 219 57.1
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.1e-59 233.0 223 54.7
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.7e-57 227.3 217 52.5
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.1e-56 224.6 269 47.6
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.6e-55 220.7 211 56.9
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 5.6e-53 212.2 291 49.1
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.8e-51 205.3 170 64.1
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.7e-47 193.4 173 57.8
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 3.8e-33 146.4 214 39.7
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 4.9e-33 146.0 210 41.9
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.3e-32 141.7 124 58.9
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.0e-30 136.7 192 44.8
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 2.8e-28 130.2 116 60.3
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.3e-25 121.3 73 80.8
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 2.2e-25 120.6 214 34.6
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.9e-22 109.8 70 74.3
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.5e-16 90.5 88 54.5
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 1.9e-13 80.9 47 78.7
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.2e-12 77.4 52 71.2
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 3.7e-12 76.6 81 56.8
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 1.1e-11 75.1 77 57.1
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.3e-09 68.2 48 72.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.1e-08 65.1 36 83.3
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 3.2e-08 63.5 45 73.3
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 7.2e-08 62.4 70 52.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.6e-07 60.1 50 54.0


User provided reference genes

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