Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 0.0e+00 1614.7 1012 100.0
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 0.0e+00 1585.9 1012 96.6
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 0.0e+00 1374.4 1017 86.3
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 0.0e+00 1371.7 1021 83.6
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 0.0e+00 1352.8 1033 80.7
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 0.0e+00 1281.2 1039 77.2
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 8.7e-281 970.7 1030 60.1
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 1.4e-278 963.4 1028 59.8
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 1.1e-275 953.7 1034 59.6
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 2.0e-269 932.9 1047 58.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 3.4e-269 932.2 1038 58.8
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 7.6e-269 931.0 1030 60.6
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 4.6e-266 921.8 1041 59.5
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 2.5e-264 916.0 1024 59.3
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 3.3e-264 915.6 1051 57.9
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 2.8e-263 912.5 1036 58.2
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 2.8e-263 912.5 1037 59.9
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 6.3e-263 911.4 1036 58.4
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 8.2e-263 911.0 708 75.8
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 1.4e-262 910.2 1046 57.3
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 3.1e-262 909.1 1033 59.1
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 4.1e-262 908.7 1028 60.1
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 4.1e-262 908.7 1024 58.9
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.2e-261 907.1 1114 57.2
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 4.5e-261 905.2 1040 57.2
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 4.5e-261 905.2 1032 61.2
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 7.7e-261 904.4 1048 57.6
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 7.7e-261 904.4 1033 60.5
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.0e-260 904.0 1018 58.2
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 2.2e-260 902.9 1038 58.0
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 2.9e-260 902.5 1037 59.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 6.5e-260 901.4 1025 58.8
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.9e-259 899.8 1041 56.5
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 3.2e-259 899.0 1039 60.6
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 2.7e-258 896.0 1060 56.0
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 1.8e-257 893.3 1035 58.8
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 6.7e-257 891.3 1040 57.6
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 2.0e-256 889.8 1031 58.2
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 7.0e-254 881.3 1045 57.1
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 9.1e-254 880.9 1022 56.2
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 1.5e-253 880.2 1051 56.7
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 2.6e-253 879.4 1023 55.8
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 2.6e-253 879.4 1053 55.8
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.3e-252 877.1 1023 57.1
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.3e-252 877.1 1025 57.8
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 2.9e-252 875.9 1046 57.3
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 8.5e-252 874.4 1026 56.0
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 3.2e-251 872.5 1043 56.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 3.2e-251 872.5 1048 57.0
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.2e-250 870.5 1030 55.3
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 2.1e-250 869.8 1020 57.5
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.4e-249 867.1 1038 58.4
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.3e-249 866.3 1047 61.9
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.9e-249 865.5 1063 56.1
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 5.2e-249 865.1 1020 56.4
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 6.7e-249 864.8 1013 55.8
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 8.8e-249 864.4 1056 54.3
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 2.0e-248 863.2 1031 56.9
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 1.3e-247 860.5 1014 55.0
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 1.7e-247 860.1 1011 56.1
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 8.2e-247 857.8 1026 56.2
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.8e-246 856.7 1007 55.9
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.8e-246 856.7 1012 55.1
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.4e-246 856.3 1028 57.5
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 3.1e-246 855.9 1185 52.5
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.2e-245 854.0 1025 55.0
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.2e-245 854.0 1034 56.3
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.5e-245 852.4 1030 55.7
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 2.9e-244 849.4 1014 55.9
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 3.2e-243 845.9 1025 58.0
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 7.2e-243 844.7 1025 58.0
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 9.4e-243 844.3 1031 55.5
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 6.1e-242 841.6 1009 55.3
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 1.0e-241 840.9 1019 54.5
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.0e-241 839.3 1026 55.2
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 5.2e-241 838.6 1135 52.2
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 2.6e-240 836.3 1032 55.0
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 3.3e-240 835.9 1034 56.7
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 4.4e-240 835.5 1035 55.6
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 9.7e-240 834.3 994 55.6
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 9.7e-240 834.3 1055 53.3
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 1.7e-239 833.6 1038 55.3
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 4.8e-239 832.0 1025 55.7
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 4.8e-239 832.0 1026 54.5
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 4.1e-238 828.9 1045 54.4
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 4.1e-238 828.9 1035 58.8
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-236 824.3 1015 55.3
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.9e-236 822.8 1016 55.2
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 6.5e-236 821.6 1044 55.3
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.2e-235 819.3 1044 54.6
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 2.1e-234 816.6 1032 56.6
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 1.8e-233 813.5 1151 51.0
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 1.2e-232 810.8 1041 53.0
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.2e-232 810.8 1034 54.5
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 3.7e-231 805.8 1042 52.7
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 3.7e-231 805.8 1012 55.5
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.4e-230 803.9 1035 53.6
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 2.4e-230 803.1 1022 53.9
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.7e-229 799.7 1029 52.8
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 3.5e-229 799.3 1077 54.9
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 2.3e-228 796.6 1041 53.4
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.6e-226 790.4 1016 53.9
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 2.8e-226 789.6 1059 51.8
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 2.6e-224 783.1 1025 52.8
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.3e-223 780.8 1024 53.4
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.8e-223 779.6 1018 52.2
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 1.1e-222 777.7 1051 51.1
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.8e-222 776.9 1042 51.4
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 3.5e-221 772.7 1050 54.2
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 2.9e-220 769.6 1023 54.7
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 6.8e-217 758.4 1010 51.9
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 2.0e-216 756.9 1020 52.3
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 3.7e-215 752.7 1019 51.3
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 6.2e-210 735.3 1032 51.6
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 3.0e-204 716.5 1056 50.5
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 4.0e-193 679.5 1063 48.3
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 5.2e-193 679.1 1065 47.3
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 4.6e-181 639.4 1018 46.5
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 2.4e-177 627.1 1112 43.6
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 8.7e-172 608.6 478 75.3
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 6.0e-165 585.9 936 46.5
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.9e-164 583.2 1051 41.3
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 6.9e-153 545.8 1033 41.2
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.1e-150 538.5 821 48.0
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 9.4e-150 535.4 557 62.7
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.6e-149 534.6 618 55.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.2e-130 471.1 751 45.0
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 6.1e-109 399.8 392 61.7
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 6.1e-101 373.2 1065 31.3
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 4.2e-73 280.8 542 46.3
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 8.1e-69 266.5 341 55.1
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 7.6e-67 260.0 525 41.5
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 8.1e-53 213.4 232 61.6
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.2e-49 201.1 275 52.7
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-48 199.1 158 75.3
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 3.0e-47 194.9 199 60.3
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.8e-45 188.3 116 88.8
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 1.4e-44 186.0 324 41.4
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 9.3e-41 173.3 719 30.2
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 1.6e-37 162.5 363 40.8
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.8e-36 159.1 244 48.8
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 1.1e-33 149.8 421 38.2
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 1.0e-31 143.3 120 71.7
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 2.0e-30 139.0 503 36.0
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 2.2e-29 135.6 90 82.2
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 4.1e-28 131.3 88 78.4
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 4.1e-28 131.3 87 81.6
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.5e-27 129.4 91 79.1
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 1.7e-26 125.9 111 65.8
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 3.8e-26 124.8 100 73.0
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 2.5e-25 122.1 106 63.2
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 7.2e-25 120.6 685 27.2
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 9.4e-25 120.2 421 32.8
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.6e-24 119.4 99 69.7
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 2.7e-24 118.6 117 59.0
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 3.6e-24 118.2 484 30.2
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.0e-23 116.7 354 30.2
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 3.0e-23 115.2 645 24.3
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 1.7e-21 109.4 84 71.4
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 4.8e-21 107.8 466 33.3
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 2.4e-20 105.5 144 51.4
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 4.1e-20 104.8 589 28.4
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 7.0e-20 104.0 63 82.5
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 4.0e-15 88.2 88 59.1
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 4.0e-15 88.2 60 81.7
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 5.2e-15 87.8 117 50.4
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 4.4e-14 84.7 196 38.8
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 3.7e-13 81.6 73 67.1
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 8.2e-13 80.5 65 67.7
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 3.1e-12 78.6 82 57.3
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 7.0e-12 77.4 71 64.8
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-11 76.3 74 58.1
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 3.5e-11 75.1 97 50.5
MBI19_g34543_MAGBIO Magnolia biondii HOM05D003521 ORTHO05D000476 7.2e-09 67.4 43 81.4
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 9.4e-09 67.0 79 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 4.7e-08 64.7 329 24.6
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 3.0e-07 62.0 75 48.0
Ca_25011_v3 Cicer arietinum L. HOM05D010632 ORTHO05D000013 5.2e-07 61.2 47 68.1
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 6.8e-07 60.8 45 68.9
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 1.5e-06 59.7 45 64.4


User provided reference genes

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