Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 3.5e-147 525.0 277 100.0
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.2e-146 522.3 277 99.3
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.6e-144 516.2 277 97.8
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.5e-137 492.3 276 93.5
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 3.5e-131 471.9 277 90.3
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 4.3e-121 438.3 277 84.8
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 9.5e-121 437.2 275 86.5
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 9.8e-110 400.6 258 82.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 9.8e-110 400.6 282 77.7
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 4.9e-109 398.3 280 78.6
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.1e-108 397.1 280 78.6
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.4e-108 394.8 284 76.8
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.6e-107 393.3 279 77.8
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.1e-107 392.9 275 77.8
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 3.5e-107 392.1 280 77.1
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 7.8e-107 391.0 281 77.6
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 1.0e-106 390.6 285 76.5
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.0e-106 390.6 281 75.8
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.3e-106 390.2 276 76.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.3e-106 390.2 281 76.2
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.7e-106 389.8 277 77.6
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 3.9e-106 388.7 284 75.4
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 8.6e-106 387.5 280 75.0
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 8.6e-106 387.5 285 76.5
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 8.6e-106 387.5 280 75.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.1e-105 387.1 281 75.1
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.5e-105 386.7 285 75.1
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.5e-105 386.7 280 76.1
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.5e-105 386.7 285 75.8
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.5e-105 386.0 283 74.9
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.3e-105 385.6 281 75.1
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 3.3e-105 385.6 278 76.3
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 3.3e-105 385.6 282 74.8
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 7.3e-105 384.4 278 75.9
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 7.3e-105 384.4 224 89.7
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 9.5e-105 384.0 277 76.2
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.6e-104 383.3 277 75.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.1e-104 382.9 277 75.8
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.1e-104 382.9 275 76.4
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 6.2e-104 381.3 280 74.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 6.2e-104 381.3 280 74.3
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 6.2e-104 381.3 277 76.9
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 8.1e-104 380.9 287 73.5
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 8.1e-104 380.9 277 74.7
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 1.1e-103 380.6 278 76.3
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.1e-103 380.6 285 74.7
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 1.1e-103 380.6 285 74.0
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-103 379.8 287 74.6
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.8e-103 379.8 287 74.6
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 2.3e-103 379.4 284 74.6
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.1e-103 379.0 287 74.2
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.0e-103 378.6 283 75.6
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.2e-103 378.3 287 74.6
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.8e-103 377.9 287 74.2
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 6.8e-103 377.9 276 73.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.2e-102 377.1 289 73.4
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.2e-102 377.1 287 74.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.5e-102 376.7 287 72.1
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.0e-102 376.3 280 75.4
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.0e-102 376.3 281 75.8
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 9.9e-102 374.0 261 78.5
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.7e-101 373.2 282 73.4
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.2e-101 372.9 286 73.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 2.9e-101 372.5 285 74.4
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.9e-101 372.5 287 73.9
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.9e-101 372.5 284 73.2
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.1e-100 370.5 275 74.9
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.4e-100 369.4 282 72.0
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.4e-100 369.4 279 74.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.4e-100 369.4 279 74.6
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.4e-100 369.4 281 71.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.2e-100 369.0 283 72.1
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.2e-100 369.0 280 73.2
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.1e-100 368.6 278 73.4
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.2e-99 367.1 284 71.8
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.2e-99 367.1 285 71.9
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.6e-99 366.7 278 74.5
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 3.5e-99 365.5 278 74.8
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 4.6e-99 365.2 282 71.6
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 6.0e-99 364.8 283 73.9
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 6.0e-99 364.8 277 73.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 6.0e-99 364.8 278 73.7
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 7.8e-99 364.4 278 74.1
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.0e-98 364.0 284 72.5
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.3e-98 363.6 282 74.1
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.3e-98 363.6 279 74.6
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.7e-98 363.2 278 74.1
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-98 361.7 280 72.5
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-98 361.7 278 73.7
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 5.1e-98 361.7 278 73.7
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 5.1e-98 361.7 278 73.7
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 5.1e-98 361.7 278 73.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 6.6e-98 361.3 278 74.1
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 8.6e-98 360.9 278 73.7
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 8.6e-98 360.9 278 73.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 1.1e-97 360.5 274 73.7
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 1.9e-97 359.8 279 74.2
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 1.9e-97 359.8 278 73.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 1.9e-97 359.8 279 74.2
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 3.3e-97 359.0 283 69.6
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 4.3e-97 358.6 279 71.7
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 4.3e-97 358.6 234 80.8
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 9.6e-97 357.5 279 73.8
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.6e-96 356.7 241 81.3
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.1e-96 356.3 283 72.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 3.6e-96 355.5 276 71.7
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 4.7e-96 355.1 274 73.4
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.7e-96 355.1 285 72.3
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 6.2e-96 354.8 283 72.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.4e-95 353.6 278 71.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.1e-95 352.4 201 88.6
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.1e-95 352.4 284 71.1
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 5.2e-95 351.7 275 71.6
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.6e-94 349.4 283 71.7
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.8e-94 348.2 282 68.8
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.1e-92 344.0 282 70.2
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.1e-89 334.0 196 85.7
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 9.9e-86 320.9 278 64.0
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 8.4e-85 317.8 201 81.1
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.2e-83 313.9 280 65.0
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.6e-80 303.5 215 73.5
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.9e-76 290.0 172 85.5
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.7e-72 275.8 248 66.1
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 1.1e-65 254.2 165 80.6
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.5e-65 253.8 200 74.5
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.3e-64 250.8 203 74.4
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.4e-62 242.7 163 74.2
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-61 240.7 136 90.4
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.5e-57 227.3 208 66.8
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 8.2e-56 221.5 167 68.3
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.0e-45 188.0 282 46.8
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.6e-41 173.3 123 73.2
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.7e-40 170.6 154 68.2
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.6e-38 164.1 98 82.7
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.5e-37 158.7 187 47.6
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 6.5e-37 158.7 240 50.8
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.7e-35 152.5 240 40.8
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.5e-21 105.1 83 73.5
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 7.0e-15 85.5 119 52.9
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 8.0e-11 72.0 180 30.6
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 5.7e-09 65.9 167 31.1
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 9.8e-09 65.1 36 86.1
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 4.9e-08 62.8 36 86.1
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 3.2e-07 60.1 65 52.3


User provided reference genes

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