Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g053590.4 Solanum lycopersicum HOM05D003499 ORTHO05D004754 0.0e+00 1184.5 717 100.0
Sopen06g018680 Solanum pennellii HOM05D003499 ORTHO05D004754 0.0e+00 1166.0 717 98.2
PGSC0003DMG400016328 Solanum tuberosum HOM05D003499 ORTHO05D004754 2.0e-311 1072.0 744 89.2
CAN.G374.15 Capsicum annuum HOM05D003499 ORTHO05D004754 3.3e-250 868.6 754 70.8
Nitab4.5_0005627g0040 Nicotiana tabacum HOM05D003499 ORTHO05D004754 2.7e-236 822.4 751 68.2
Nitab4.5_0002333g0110 Nicotiana tabacum HOM05D003499 ORTHO05D004754 3.5e-236 822.0 744 68.8
Peaxi162Scf00579g00316 Petunia axillaris HOM05D003499 ORTHO05D004754 1.3e-222 776.9 749 68.0
Potri.008G080900 Populus trichocarpa HOM05D003499 ORTHO05D004754 7.0e-99 365.9 766 41.3
Prupe.4G125000 Prunus persica HOM05D003499 ORTHO05D004754 1.3e-92 345.1 742 39.2
GSVIVG01036698001 Vitis vinifera HOM05D003499 ORTHO05D004754 2.6e-90 337.4 791 42.6
Cfa017771 Carpinus fangiana HOM05D003499 ORTHO05D004754 1.3e-89 335.1 751 41.5
Sabra08G0060200 Salix brachista HOM05D003499 ORTHO05D004754 5.0e-89 333.2 837 36.8
Cc00_g09120 Coffea canephora HOM05D003499 ORTHO05D004754 2.1e-87 327.8 771 41.5
Dinv19570 Davidia involucrata HOM05D003499 ORTHO05D004754 4.7e-87 326.6 783 44.6
Phvul.005G045700 Phaseolus vulgaris HOM05D003499 ORTHO05D004754 4.0e-86 323.6 779 37.2
QL04p095880 Quercus lobata HOM05D003499 ORTHO05D004754 5.2e-86 323.2 791 38.7
Actinidia26203 Actinidia chinensis HOM05D003499 ORTHO05D004754 1.3e-84 318.5 761 39.0
Manes.16G052800 Manihot esculenta HOM05D003499 ORTHO05D004754 3.7e-84 317.0 756 40.7
VMungo1080G1290 Vigna mungo HOM05D003499 ORTHO05D004754 4.1e-83 313.5 763 37.2
Oeu025989.1 Olea europaea HOM05D003499 ORTHO05D004754 4.5e-82 310.1 752 38.0
Haze_18466 Corylus avellana HOM05D003499 ORTHO05D004754 7.2e-80 302.8 848 37.6
CiPaw.15G111600 Carya illinoinensis HOM05D003499 ORTHO05D004754 4.7e-79 300.1 796 35.8
Glyma.08G162300 Glycine max HOM05D003499 ORTHO05D004754 1.4e-78 298.5 770 36.9
Oeu025990.2 Olea europaea HOM05D003499 ORTHO05D004754 1.4e-78 298.5 754 38.1
Psat0s13g0320 Pisum sativum HOM05D003499 ORTHO05D004754 2.6e-77 294.3 746 36.5
TWI38G0606 Tripterygium wilfordii HOM05D003499 ORTHO05D004754 4.4e-77 293.5 772 36.8
Glyma.15G265300 Glycine max HOM05D003499 ORTHO05D004754 5.7e-77 293.1 762 36.4
Lj2A6T29 Lonicera japonica HOM05D003499 ORTHO05D004754 4.9e-76 290.0 821 35.9
Gohir.A01G100800 Gossypium hirsutum HOM05D003499 ORTHO05D004754 6.3e-76 289.7 806 35.2
Thecc.07G189900 Theobroma cacao HOM05D003499 ORTHO05D004754 2.3e-73 281.2 792 35.2
Dinv42452 Davidia involucrata HOM05D003499 ORTHO05D004754 5.0e-73 280.0 680 41.3
Atru.chr1.17 Acer truncatum HOM05D003499 ORTHO05D004754 5.5e-72 276.6 755 36.0
Gohir.D01G085300 Gossypium hirsutum HOM05D003499 ORTHO05D004754 9.5e-72 275.8 780 35.3
Lalb_Chr01g0015591 Lupinus albus HOM05D003499 ORTHO05D004754 2.8e-71 274.2 771 34.9
TAR626G0290 Trochodendron aralioides HOM05D003499 ORTHO05D004754 3.6e-71 273.9 776 36.0
Medtr2g063480 Medicago truncatula HOM05D003499 ORTHO05D004754 8.0e-71 272.7 785 33.8
MSTRG.14572 Avicennia marina HOM05D003499 ORTHO05D004754 1.8e-70 271.6 748 35.6
Gorai.002G110900 Gossypium raimondii HOM05D003499 ORTHO05D004754 1.5e-69 268.5 782 34.9
CiPaw.16G079000 Carya illinoinensis HOM05D003499 ORTHO05D004754 1.8e-67 261.5 769 33.8
TPR.G3598 Trifolium pratense HOM05D003499 ORTHO05D004754 4.1e-67 260.4 766 34.1
RcHm_v2.0_Chr5g0023031 Rosa chinensis HOM05D003499 ORTHO05D004754 5.4e-67 260.0 795 33.3
Duzib213G0086 Durio zibethinus HOM05D003499 ORTHO05D004754 7.0e-67 259.6 753 37.1
DCAR_013704 Daucus carota HOM05D003499 ORTHO05D004754 1.2e-66 258.8 658 38.6
FvH4_3g13850 Fragaria vesca HOM05D003499 ORTHO05D004754 1.2e-63 248.8 773 33.1
Ciclev10006542m.g Citrus clementina HOM05D003499 ORTHO05D004754 3.4e-61 240.7 769 35.5
Nn7g38420 Nelumbo nucifera HOM05D003499 ORTHO05D004754 7.5e-61 239.6 763 37.9
FAN25G2460 Fragaria x ananassa HOM05D003499 ORTHO05D004754 9.8e-61 239.2 789 32.8
Lalb_Chr25g0284181 Lupinus albus HOM05D003499 ORTHO05D004754 8.3e-60 236.1 762 33.2
FAN21G2046 Fragaria x ananassa HOM05D003499 ORTHO05D004754 3.2e-59 234.2 787 32.8
CANSAT56G3760 Cannabis sativa HOM05D003499 ORTHO05D004754 3.5e-58 230.7 733 33.3
Rhsim09G0000500 Rhododendron simsii HOM05D003499 ORTHO05D004754 3.9e-57 227.3 797 33.8
arahy.Tifrunner.gnm1.ann1.DHQL63 Arachis hypogaea HOM05D003499 ORTHO05D004754 4.3e-56 223.8 758 32.1
Ca_03376_v3 Cicer arietinum L. HOM05D003499 ORTHO05D004754 4.3e-56 223.8 771 32.3
Hund21305 Selenicereus undatus HOM05D003499 ORTHO05D004754 8.1e-55 219.5 610 36.4
FAN11G2210 Fragaria x ananassa HOM05D003499 ORTHO05D004754 4.0e-54 217.2 791 32.0
CsaV3_7G023140 Cucumis sativus L. HOM05D003499 ORTHO05D004754 7.5e-53 213.0 751 36.1
MD05G1240600 Malus domestica HOM05D003499 ORTHO05D004754 9.8e-53 212.6 765 34.1
Eucgr.F04480 Eucalyptus grandis HOM05D003499 ORTHO05D004754 6.4e-52 209.9 548 35.2
arahy.Tifrunner.gnm1.ann1.LW990M Arachis hypogaea HOM05D003499 ORTHO05D004754 1.1e-51 209.1 772 31.1
ClCG09G022890 Citrullus lanatus HOM05D003499 ORTHO05D004754 5.4e-51 206.8 765 35.8
Migut.H01651 Erythranthe guttata HOM05D003499 ORTHO05D004754 2.5e-48 198.0 735 32.9
MELO3C012583.2 Cucumis melo HOM05D003499 ORTHO05D004754 7.3e-48 196.4 765 32.3
AUR62012541 Chenopodium quinoa HOM05D003499 ORTHO05D004754 3.6e-47 194.1 791 35.3
Ah.09g236940 Amaranthus hybridus HOM05D003499 ORTHO05D004754 8.1e-47 193.0 625 33.4
CDE02G3941 Ceratophyllum demersum HOM05D003499 ORTHO05D004754 6.8e-46 189.9 734 32.8
EL10Ac8g19951 Beta vulgaris HOM05D003499 ORTHO05D004754 1.2e-45 189.1 584 34.2
Lj3g0016310 Lotus japonicus HOM05D003499 ORTHO05D004754 5.8e-45 186.8 535 35.7
Sc05g0008250 Simmondsia chinensis HOM05D003499 ORTHO05D004754 2.4e-43 181.4 670 31.9
AUR62014655 Chenopodium quinoa HOM05D003499 ORTHO05D004754 9.2e-43 179.5 824 34.5
Sed0001737 Sechium edule HOM05D003499 ORTHO05D004754 2.0e-37 161.8 752 30.6
FAN16G2389 Fragaria x ananassa HOM05D003499 ORTHO05D004754 2.2e-36 158.3 700 29.0
THA.LOC104813306 Tarenaya hassleriana HOM05D003499 ORTHO05D004754 4.9e-36 157.1 596 33.4
unitig_578.g16338 Utricularia gibba HOM05D003499 ORTHO05D004754 9.3e-35 152.9 753 30.1
Thhalv10017995m.g Eutrema salsugineum HOM05D003499 ORTHO05D004754 3.0e-33 147.9 610 31.5
Sp5g34360 Schrenkiella parvula HOM05D003499 ORTHO05D004754 5.1e-33 147.1 790 32.7
Aa31LG4G1710 Aethionema arabicum HOM05D003499 ORTHO05D004754 4.3e-32 144.1 634 30.6
HanXRQChr14g0459251 Helianthus annuus HOM05D003499 ORTHO05D004754 4.3e-32 144.1 789 28.0
Carub.0002s2615 Capsella rubella HOM05D003499 ORTHO05D004754 2.0e-29 135.2 814 27.5
BraA07t30364Z Brassica rapa HOM05D003499 ORTHO05D004754 2.6e-29 134.8 776 30.0
PGR031G3814 Punica granatum HOM05D003499 ORTHO05D004754 3.4e-29 134.4 580 29.3
A07p27200 Brassica napus HOM05D003499 ORTHO05D004754 3.8e-28 131.0 791 29.1
ECA233G1650 Erigeron canadensis HOM05D003499 ORTHO05D004754 1.4e-27 129.0 766 27.7
PSO541G3284 Papaver somniferum HOM05D003499 ORTHO05D004754 2.7e-26 124.8 824 27.4
BraA07t31947Z Brassica rapa HOM05D003499 ORTHO05D004754 3.9e-25 120.9 790 30.3
PSO675G8338 Papaver somniferum HOM05D003499 ORTHO05D004754 5.1e-25 120.6 686 27.3
COL.COLO4_25003 Corchorus olitorius HOM05D003499 ORTHO05D004754 1.1e-24 119.4 634 29.5
CARHR072950 Cardamine hirsuta HOM05D003499 ORTHO05D004754 1.9e-24 118.6 758 28.6
BcaB02g07209 Brassica carinata HOM05D003499 ORTHO05D004754 5.6e-24 117.1 778 30.7
BcaC08g45365 Brassica carinata HOM05D003499 ORTHO05D004754 2.4e-22 111.7 802 28.6
BolC6t38157H Brassica oleracea HOM05D003499 ORTHO05D004754 2.4e-22 111.7 802 28.6
C06p29970 Brassica napus HOM05D003499 ORTHO05D004754 4.0e-22 110.9 802 28.6
A07p44380 Brassica napus HOM05D003499 ORTHO05D004754 2.2e-20 105.1 783 29.2
Lsat_1_v5_gn_8_41780 Lactuca sativa HOM05D003499 ORTHO05D004754 8.4e-20 103.2 685 26.4
C06p53180 Brassica napus HOM05D003499 ORTHO05D004754 5.1e-17 94.0 792 28.5
BolC6t40336H Brassica oleracea HOM05D003499 ORTHO05D004754 1.3e-15 89.4 781 28.0
Cpa.g.sc2332.1 Carica papaya HOM05D003499 ORTHO05D004754 1.8e-14 85.5 277 33.2
MBI02_g17883_MAGBIO Magnolia biondii HOM05D003499 ORTHO05D004754 4.0e-14 84.3 394 33.8
SGA_v2.0_scaffold239G43999 Striga asiatica HOM05D003499 ORTHO05D004754 4.0e-14 84.3 753 28.4
ATR1127G224 Amborella trichopoda HOM05D003499 ORTHO05D004754 5.8e-13 80.5 578 28.5
AUR62018106 Chenopodium quinoa HOM05D003499 ORTHO05D004754 3.8e-12 77.8 426 31.2
Aqoxy1G01362 Aquilegia oxysepala HOM05D003499 ORTHO05D004754 2.5e-11 75.1 728 26.9
Rhsim12G0215500 Rhododendron simsii HOM05D003499 ORTHO05D004754 4.6e-10 70.9 257 32.7
HPP92_017348 Vanilla planifolia HOM05D003499 ORTHO05D004754 1.0e-09 69.7 558 26.7
AL2G39880 Arabidopsis lyrata HOM05D003499 ORTHO05D004754 1.3e-09 69.3 777 27.2
Rhsim06G0244900 Rhododendron simsii HOM05D003499 ORTHO05D004754 1.9e-08 65.5 308 31.5
Cpa.g.sc569.2 Carica papaya HOM05D003499 ORTHO05D004754 1.3e-07 62.8 176 47.2
Os02g0741500 Oryza sativa ssp. japonica HOM05D003499 ORTHO05D004754 6.3e-07 60.5 757 28.9
Sabra19G0031200 Salix brachista HOM05D000228 ORTHO05D001122 1.4e-06 59.3 54 53.7
Sabra16G0132400 Salix brachista HOM05D000228 ORTHO05D001122 5.3e-06 57.4 54 51.9
Sabra11G0075400 Salix brachista HOM05D000228 ORTHO05D001122 6.9e-06 57.0 54 51.9
Sabra16G0005400 Salix brachista HOM05D000228 ORTHO05D001122 6.9e-06 57.0 54 51.9


User provided reference genes

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