Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.1e-63 246.5 130 100.0
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 2.1e-33 146.0 93 82.8
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.7e-24 116.3 103 63.1
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 3.0e-24 115.5 95 65.3
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 3.0e-24 115.5 95 65.3
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 3.0e-24 115.5 95 65.3
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.9e-24 115.2 95 65.3
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 3.9e-24 115.2 95 65.3
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 3.9e-24 115.2 95 65.3
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 1.1e-23 113.6 77 74.0
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.5e-23 112.5 95 63.2
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 2.5e-23 112.5 77 74.0
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 4.3e-23 111.7 95 61.1
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 5.6e-23 111.3 95 63.2
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 9.5e-23 110.5 95 62.1
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.5e-23 110.5 77 71.4
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 9.5e-23 110.5 77 71.4
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 9.5e-23 110.5 77 71.4
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.2e-22 110.2 78 71.8
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.6e-22 109.8 95 61.1
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.6e-22 109.8 95 63.2
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 2.1e-22 109.4 95 60.0
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 2.1e-22 109.4 94 61.7
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 2.8e-22 109.0 77 70.1
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 2.8e-22 109.0 95 61.1
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 4.7e-22 108.2 77 70.1
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 4.7e-22 108.2 81 65.4
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.1e-22 107.5 95 60.0
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.1e-21 107.1 77 70.1
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.1e-21 107.1 95 61.1
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.1e-21 107.1 95 61.1
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.8e-21 106.3 95 60.0
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 1.8e-21 106.3 95 60.0
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.4e-21 105.9 94 58.5
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 4.0e-21 105.1 95 58.9
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 4.0e-21 105.1 95 58.9
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 4.0e-21 105.1 95 55.8
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 4.0e-21 105.1 95 56.8
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 4.0e-21 105.1 95 56.8
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 5.2e-21 104.8 95 58.9
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.2e-21 104.8 94 59.6
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 5.2e-21 104.8 101 57.4
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 5.2e-21 104.8 95 57.9
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 6.8e-21 104.4 75 70.7
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 6.8e-21 104.4 95 57.9
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 6.8e-21 104.4 77 68.8
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 8.9e-21 104.0 95 57.9
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 8.9e-21 104.0 77 67.5
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 8.9e-21 104.0 95 57.9
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 8.9e-21 104.0 95 56.8
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.2e-20 103.6 77 68.8
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.2e-20 103.6 95 56.8
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.2e-20 103.6 94 58.5
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.2e-20 103.6 94 58.5
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 1.2e-20 103.6 95 57.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.5e-20 103.2 91 58.2
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.5e-20 103.2 76 65.8
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 2.0e-20 102.8 95 54.7
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.6e-20 102.4 95 56.8
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 2.6e-20 102.4 95 57.9
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 2.6e-20 102.4 95 54.7
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 2.6e-20 102.4 95 54.7
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.6e-20 102.4 95 55.8
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.4e-20 102.1 95 56.8
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.4e-20 102.1 97 53.6
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 3.4e-20 102.1 95 55.8
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 3.4e-20 102.1 94 56.4
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 4.4e-20 101.7 95 56.8
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 4.4e-20 101.7 95 54.7
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 4.4e-20 101.7 94 56.4
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 5.8e-20 101.3 97 52.6
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 5.8e-20 101.3 97 55.7
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 7.6e-20 100.9 94 55.3
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 7.6e-20 100.9 94 55.3
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 7.6e-20 100.9 95 54.7
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 9.9e-20 100.5 94 55.3
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 9.9e-20 100.5 97 52.6
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-19 100.1 95 54.7
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 1.3e-19 100.1 94 57.4
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 1.7e-19 99.8 97 52.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.7e-19 99.8 101 51.5
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.7e-19 99.8 95 55.8
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.2e-19 99.4 99 53.5
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 2.2e-19 99.4 99 53.5
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 2.9e-19 99.0 94 54.3
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.9e-19 99.0 94 54.3
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 2.9e-19 99.0 94 54.3
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 3.8e-19 98.6 94 54.3
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 3.8e-19 98.6 94 55.3
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 3.8e-19 98.6 94 54.3
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 3.8e-19 98.6 94 54.3
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.9e-19 98.2 96 52.1
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 4.9e-19 98.2 76 61.8
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.9e-19 98.2 94 53.2
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.9e-19 98.2 99 52.5
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 4.9e-19 98.2 99 53.5
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 6.4e-19 97.8 73 61.6
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 6.4e-19 97.8 81 60.5
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 8.4e-19 97.4 92 54.3
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 8.4e-19 97.4 81 59.3
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 8.4e-19 97.4 74 63.5
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.1e-18 97.1 99 51.5
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.1e-18 97.1 94 53.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 1.1e-18 97.1 99 52.5
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.4e-18 96.7 97 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.4e-18 96.7 96 52.1
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-18 96.7 99 51.5
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-18 96.7 99 51.5
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-18 96.7 99 51.5
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 1.4e-18 96.7 78 60.3
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 1.4e-18 96.7 99 51.5
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.4e-18 96.7 94 53.2
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 1.9e-18 96.3 95 57.9
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.9e-18 96.3 99 51.5
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 3.2e-18 95.5 83 56.6
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 4.2e-18 95.1 94 52.1
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 5.4e-18 94.7 77 58.4
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 9.2e-18 94.0 69 63.8
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.2e-17 93.6 99 50.5
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 1.2e-17 93.6 95 55.8
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.6e-17 93.2 94 56.4
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.1e-17 92.8 95 50.5
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 4.6e-17 91.7 76 57.9
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 4.6e-17 91.7 75 56.0
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.0e-16 90.5 94 50.0
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.0e-16 90.5 75 56.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.7e-16 89.7 101 47.5
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 1.7e-16 89.7 101 47.5
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.5e-15 86.7 105 48.6
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.5e-15 86.7 94 46.8
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.9e-15 86.3 75 54.7
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 7.3e-15 84.3 78 56.4
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 7.3e-15 84.3 56 71.4
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 2.1e-14 82.8 108 44.4
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 4.8e-14 81.6 135 39.3
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 2.4e-13 79.3 75 49.3
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.5e-12 76.6 74 55.4
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.7e-11 73.2 70 51.4
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 1.4e-10 70.1 62 58.1
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 7.1e-10 67.8 64 54.7
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 4.6e-09 65.1 62 53.2
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 1.7e-08 63.2 62 51.6
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 3.0e-08 62.4 62 51.6


User provided reference genes

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