Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 2413.3 1203 100.0
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 2395.2 1203 99.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 2256.5 1202 92.3
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 2191.8 1204 89.2
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2129.0 1273 83.7
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 2124.4 1383 77.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1761.1 1199 71.0
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1750.3 1205 70.0
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1738.8 1191 69.9
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1735.7 1200 69.9
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1731.8 1204 69.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1731.5 1193 70.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1709.1 1206 68.9
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1702.6 1208 67.5
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1676.8 1192 67.4
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1670.2 1211 67.7
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1668.7 1197 67.2
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1661.7 1199 67.5
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1660.2 1193 67.1
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1650.6 1192 66.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1648.6 1173 67.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1644.0 1232 65.3
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1642.9 1198 66.6
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1638.2 1197 66.4
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1634.0 1192 66.1
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1633.6 1195 65.7
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1631.3 1192 66.0
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1630.2 1199 66.0
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1629.8 1204 65.4
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1629.0 1198 66.0
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1629.0 1182 66.7
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1626.3 1195 66.4
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1624.8 1195 65.6
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1624.8 1195 65.9
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1622.4 1179 65.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1621.7 1206 65.8
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1620.1 1201 65.4
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1620.1 1194 65.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1617.1 1192 65.4
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1605.1 1197 64.3
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1596.6 1200 65.2
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1593.6 1161 66.7
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1593.6 1203 64.4
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1589.7 1185 64.9
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1589.7 1213 64.0
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1188 64.7
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1578.5 1192 64.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1576.6 1205 62.7
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1569.3 1195 63.6
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1568.5 1227 62.4
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1200 62.1
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1562.4 1209 62.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1560.4 1199 63.1
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1560.4 1196 62.3
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1560.4 1197 62.3
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1240 61.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1199 62.2
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1559.7 1204 63.0
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1556.6 1199 62.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1555.8 1199 63.1
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1552.0 1199 63.1
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1551.2 1184 63.7
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1549.6 1221 61.0
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1548.1 1199 63.0
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1546.6 1194 62.8
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1537.3 1205 62.1
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1537.3 1196 63.5
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1534.2 1200 62.3
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1528.5 1191 62.5
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1524.2 1196 63.0
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1522.7 1308 58.8
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1515.4 1281 60.0
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1514.2 1203 61.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1513.8 1207 61.0
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1510.4 1253 59.3
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1508.8 1198 61.1
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1506.9 1209 60.5
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1503.4 1207 60.1
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1501.5 1205 60.5
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1501.1 1200 60.3
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1501.1 1133 63.7
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1491.5 1199 60.1
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1483.4 1199 60.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1475.3 1201 60.4
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1471.8 1199 59.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1471.1 1208 59.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1466.8 1222 58.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1464.9 1181 60.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1459.5 1240 58.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1444.9 1028 67.8
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1427.9 1007 67.9
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1419.4 1195 57.7
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1415.6 1198 58.2
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1201 57.9
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1395.2 972 69.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1377.1 1208 56.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1372.5 1195 58.9
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1341.6 990 66.0
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1221.1 1192 53.9
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1200.7 1224 51.0
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1194.5 1210 50.7
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1179.9 1195 50.5
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1167.9 1198 51.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1129.8 1212 50.1
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1122.1 1178 47.4
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.5e-311 1072.4 838 61.2
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.1e-302 1042.7 856 61.6
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.5e-282 974.9 716 66.5
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 6.7e-272 941.4 764 59.2
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.6e-271 939.5 711 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 8.3e-246 854.7 1125 41.9
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 7.3e-242 841.6 1103 42.3
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 4.7e-233 812.4 1181 40.8
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 6.2e-217 758.8 753 54.2
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.2e-213 746.5 586 61.4
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 9.6e-210 734.9 497 71.2
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.9e-205 720.7 570 63.2
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 6.0e-188 662.5 496 65.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 9.1e-152 542.3 400 66.0
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 6.3e-145 519.6 412 63.6
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 4.1e-128 463.8 592 45.4
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 4.3e-125 453.8 716 37.6
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 6.4e-89 333.6 262 60.7
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.3e-84 319.3 375 44.0
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 9.3e-72 276.6 280 51.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 5.8e-66 257.3 304 45.1
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 2.5e-64 251.9 179 68.7
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 2.4e-59 235.3 308 42.5
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 4.6e-55 221.1 202 56.9
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.0e-45 189.1 140 66.4
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 9.1e-43 180.3 231 42.9
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 7.5e-29 134.0 207 42.5
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.1e-27 130.2 135 51.9
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 5.9e-26 124.4 150 48.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 3.5e-18 98.6 94 58.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 7.7e-18 97.4 75 60.0
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 6.8e-14 84.3 60 70.0
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.6e-13 82.4 65 64.6
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 8.3e-12 77.4 103 44.7
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 2.5e-08 65.9 107 34.6
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 1.2e-07 63.5 51 51.0
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 2.1e-07 62.8 58 55.2
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.1e-07 62.8 128 28.9
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 6.1e-07 61.2 49 57.1
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.4e-06 60.1 45 57.8


User provided reference genes

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