Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 5.0e-117 424.5 217 100.0
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.1e-116 423.3 217 99.5
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 3.2e-116 421.8 217 99.1
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 9.1e-111 403.7 216 94.9
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 5.9e-110 401.0 217 94.0
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 7.7e-110 400.6 216 94.4
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 3.7e-104 381.7 215 88.8
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 6.3e-104 380.9 215 89.3
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 4.1e-103 378.3 215 87.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.0e-103 377.5 215 87.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 1.2e-102 376.7 214 87.9
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.2e-102 376.7 204 94.1
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 4.5e-102 374.8 215 86.0
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.7e-101 372.9 214 88.3
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 2.9e-101 372.1 215 86.5
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 3.8e-101 371.7 215 87.0
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.9e-100 369.4 215 85.6
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 2.5e-100 369.0 215 85.6
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 2.5e-100 369.0 215 86.0
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 5.5e-100 367.9 215 85.6
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 9.4e-100 367.1 216 87.0
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.7e-99 365.5 216 86.6
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 6.1e-99 364.4 215 84.2
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.4e-98 363.2 211 86.7
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.8e-98 362.8 216 86.1
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 3.0e-98 362.1 215 84.7
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 6.8e-98 360.9 214 84.1
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 8.8e-98 360.5 211 85.3
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.2e-97 360.1 215 83.7
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.2e-97 360.1 215 84.2
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 3.4e-97 358.6 215 83.7
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.4e-97 358.6 215 83.7
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 3.4e-97 358.6 214 84.6
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.4e-97 358.2 215 83.7
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 4.4e-97 358.2 215 83.7
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 7.5e-97 357.5 215 83.7
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 1.3e-96 356.7 215 83.7
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.7e-96 356.3 215 81.4
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 3.7e-96 355.1 215 83.3
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 3.7e-96 355.1 215 83.7
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 82.3
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 83.3
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 1.4e-95 353.2 215 82.8
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 1.8e-95 352.8 215 81.9
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 2.4e-95 352.4 215 80.5
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 3.1e-95 352.1 215 82.3
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 82.3
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 82.3
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 82.3
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 4.1e-95 351.7 215 82.3
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 4.1e-95 351.7 217 83.4
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 9.2e-95 350.5 214 81.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 9.2e-95 350.5 215 80.0
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.2e-94 350.1 215 81.9
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 1.6e-94 349.7 215 80.9
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 1.6e-94 349.7 215 79.5
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 1.6e-94 349.7 215 79.5
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 1.6e-94 349.7 218 83.0
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 2.0e-94 349.4 214 80.8
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 4.5e-94 348.2 204 85.3
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 5.9e-94 347.8 215 81.4
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.3e-93 346.7 215 79.5
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 2.9e-93 345.5 215 81.4
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 3.8e-93 345.1 215 78.1
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 5.0e-93 344.7 217 82.0
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 6.6e-93 344.4 215 81.4
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.1e-92 343.6 215 77.7
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 1.1e-92 343.6 211 81.0
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.5e-92 343.2 215 79.5
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.5e-92 343.2 215 82.8
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 2.5e-92 342.4 291 65.3
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 2.5e-92 342.4 204 83.3
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 4.3e-92 341.7 215 81.9
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.3e-92 340.9 214 79.9
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 9.5e-92 340.5 215 79.5
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 1.2e-91 340.1 215 77.2
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 2.1e-91 339.3 204 85.8
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 2.8e-91 339.0 215 79.1
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 2.8e-91 339.0 221 77.4
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 3.6e-91 338.6 215 78.6
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 8.0e-91 337.4 214 79.0
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.0e-90 337.0 214 78.5
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 1.0e-90 337.0 206 82.0
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 4.0e-90 335.1 216 77.3
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 6.8e-90 334.3 216 77.3
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 6.8e-90 334.3 216 77.3
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 6.8e-90 334.3 204 82.4
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 8.9e-90 334.0 216 77.3
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 8.9e-90 334.0 216 77.3
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.2e-89 333.6 215 75.3
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 1.5e-89 333.2 204 82.4
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 2.6e-89 332.4 214 77.6
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 7.5e-89 330.9 216 76.9
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.3e-88 330.1 214 78.0
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 3.7e-88 328.6 218 76.6
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 2.4e-87 325.9 214 75.7
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.4e-87 324.7 203 78.8
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.4e-87 324.7 202 79.7
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 7.0e-87 324.3 185 89.2
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 7.0e-87 324.3 208 78.8
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 2.0e-86 322.8 196 83.2
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 4.6e-86 321.6 211 75.4
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 1.9e-84 316.2 215 77.7
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 2.8e-83 312.4 202 75.2
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 6.2e-83 311.2 203 74.4
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 1.2e-81 307.0 215 70.2
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 2.6e-81 305.8 274 58.0
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 5.0e-77 291.6 185 81.1
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.4e-74 283.5 201 72.6
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 7.5e-73 277.7 171 79.5
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 7.5e-73 277.7 220 59.5
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 3.2e-71 272.3 164 79.9
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 3.2e-71 272.3 210 65.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 7.1e-71 271.2 173 78.6
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.7e-67 258.5 210 59.5
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.4e-66 256.9 212 67.5
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 1.2e-65 253.8 215 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 5.6e-60 235.0 210 57.1
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 2.8e-59 232.6 139 81.3
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 6.2e-59 231.5 141 82.3
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 5.2e-58 228.4 142 83.1
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 2.9e-56 222.6 217 60.4
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 3.0e-53 212.6 173 67.1
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 3.0e-53 212.6 175 66.3
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 1.1e-50 204.1 148 75.0
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 3.9e-45 185.7 119 79.0
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 6.2e-43 178.3 216 52.3
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 1.1e-42 177.6 162 53.1
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.8e-42 176.8 110 76.4
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 1.4e-31 140.6 88 81.8
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.9e-31 140.2 81 87.7
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.6e-22 110.5 78 73.1
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 2.9e-16 89.7 56 75.0
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.2e-15 86.3 46 91.3
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 1.2e-14 84.3 53 71.7
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 2.1e-14 83.6 45 84.4
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.0e-13 81.3 63 66.7
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 9.1e-10 68.2 85 48.2
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.9e-07 60.5 34 85.3
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 5.5e-07 58.9 34 85.3


User provided reference genes

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