Gene: Solyc06g008010.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc06g008010.3
  • Transcript Identifier Solyc06g008010.3.1
  • Gene Type Coding gene
  • Location SL4.0ch06 : 1872328-1875298 : negative

Gene Family Information

  • ID HOM05D005338
  • #Genes/#Species 142/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc06g008010.3.1
  • uniprot A0A3Q7HJ69
  • gene_id Solyc06g008010

Descriptions

  • Description Mediator of RNA polymerase II transcription subunit 18 (AHRD V3.3 *** A0A2G3C2Z8_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT2G22370
GO:0031554
ISO
PLAZA Integrative Orthologyregulation of DNA-templated transcription, termination AT2G22370
GO:2000028
ISO
PLAZA Integrative Orthologyregulation of photoperiodism, flowering AT2G22370
GO:0032784
ISO
PLAZA Integrative Orthologyregulation of DNA-templated transcription, elongation AT2G22370
GO:0048442
ISO
PLAZA Integrative Orthologysepal development AT2G22370
GO:0048443
ISO
PLAZA Integrative Orthologystamen development AT2G22370
GO:0048510
ISO
PLAZA Integrative Orthologyregulation of timing of transition from vegetative to reproductive phase AT2G22370
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT2G22370
GO:0010219
ISO
PLAZA Integrative Orthologyregulation of vernalization response AT2G22370
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G22370
GO:0048440
ISO
PLAZA Integrative Orthologycarpel development AT2G22370
GO:0048441
ISO
PLAZA Integrative Orthologypetal development AT2G22370
GO:0009723
ISO
PLAZA Integrative Orthologyresponse to ethylene AT2G22370
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT2G22370
GO:0048833
ISO
PLAZA Integrative Orthologyspecification of floral organ number AT2G22370
GO:2000031
ISO
PLAZA Integrative Orthologyregulation of salicylic acid mediated signaling pathway AT2G22370
GO:2000142
ISO
PLAZA Integrative Orthologyregulation of DNA-templated transcription, initiation AT2G22370
GO:2001253
ISO
PLAZA Integrative Orthologyregulation of histone H3-K36 trimethylation AT2G22370
GO:1900150
ISO
PLAZA Integrative Orthologyregulation of defense response to fungus AT2G22370
GO:0006369
IBA
GOA Databasetermination of RNA polymerase II transcription
GO:0006357
IBA
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G22370
GO:0003712
IBA
IEA
GOA Databasetranscription coregulator activity
GO:0003712
IEA
InterProtranscription coregulator activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016592
IBA
IEA
GOA Databasemediator complex
GO:0016592
IEA
InterPromediator complex
GO:0070847
IBA
GOA Databasecore mediator complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019095 Mediator complex, subunit Med18
Mapman id Description
15.3.4.4.1.5 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.head module.component MED18