Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g055130.1 Solanum lycopersicum HOM05D003044 ORTHO05D001869 6.0e-46 187.2 97 100.0
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 5.6e-44 180.6 97 96.9
PGSC0003DMG400023499 Solanum tuberosum HOM05D003044 ORTHO05D001869 6.9e-42 173.7 98 93.9
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.6e-35 151.4 97 81.4
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 5.8e-33 144.1 96 77.1
CAN.G765.14 Capsicum annuum HOM05D003044 ORTHO05D001869 2.4e-31 138.7 97 77.3
CAN.G1433.1 Capsicum annuum HOM05D003044 ORTHO05D001869 1.6e-30 136.0 97 77.3
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 2.0e-25 119.0 115 61.7
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 2.0e-25 119.0 115 60.9
Oeu015285.1 Olea europaea HOM05D003044 ORTHO05D001869 4.5e-25 117.9 103 68.9
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 1.3e-24 116.3 116 59.5
Peaxi162Scf00519g00028 Petunia axillaris HOM05D003044 ORTHO05D001869 2.2e-24 115.5 98 71.4
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 2.9e-24 115.2 116 58.6
Peaxi162Scf00120g00721 Petunia axillaris HOM05D003044 ORTHO05D001869 8.4e-24 113.6 100 70.0
Nitab4.5_0011494g0020 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.1e-23 113.2 102 64.7
MSTRG.27548 Avicennia marina HOM05D003044 ORTHO05D001869 1.0e-21 106.7 103 64.1
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 3.9e-21 104.8 110 59.1
Migut.F00829 Erythranthe guttata HOM05D003044 ORTHO05D001869 7.4e-20 100.5 103 61.2
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 1.3e-19 99.8 100 62.0
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 1.3e-19 99.8 100 62.0
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 2.8e-19 98.6 104 60.6
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 1.1e-18 96.7 111 57.7
Aqoxy2G00627 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 4.0e-18 94.7 104 56.7
Dinv04420 Davidia involucrata HOM05D003044 ORTHO05D001869 3.4e-17 91.7 105 63.8
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 7.6e-17 90.5 106 59.4
SalBow6G6809 Salvia bowleyana HOM05D003044 ORTHO05D001869 1.3e-16 89.7 103 58.3
Cpa.g.sc33.124 Carica papaya HOM05D003044 ORTHO05D001869 1.7e-16 89.4 104 58.7
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 1.7e-16 89.4 108 55.6
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 1.1e-15 86.7 108 54.6
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 1.9e-15 85.9 102 58.8
Ca_18140_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 1.9e-15 85.9 104 55.8
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 1.9e-15 85.9 103 54.4
ClCG08G008450 Citrullus lanatus HOM05D003044 ORTHO05D001869 2.5e-15 85.5 109 56.0
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 2.5e-15 85.5 105 57.1
Oeu020482.1 Olea europaea HOM05D003044 ORTHO05D001869 3.2e-15 85.1 103 58.3
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 9.3e-15 83.6 106 62.3
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 1.6e-14 82.8 108 53.7
Atru.chr12.1090 Acer truncatum HOM05D003044 ORTHO05D001869 2.7e-14 82.0 111 53.2
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 4.6e-14 81.3 102 56.9
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 4.6e-14 81.3 150 44.0
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 7.9e-14 80.5 106 58.5
Rhsim09G0140200 Rhododendron simsii HOM05D003044 ORTHO05D001869 7.9e-14 80.5 104 53.8
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 7.9e-14 80.5 101 52.5
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 1.0e-13 80.1 104 53.8
Gorai.012G022800 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.3e-13 79.7 100 51.0
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 1.3e-13 79.7 103 54.4
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 1.3e-13 79.7 104 55.8
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 1.8e-13 79.3 101 55.4
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.8e-13 79.3 99 52.5
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.8e-13 79.3 99 52.5
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 3.0e-13 78.6 104 52.9
TWI63G0823 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 3.0e-13 78.6 104 55.8
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 3.9e-13 78.2 108 50.9
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 3.9e-13 78.2 111 54.1
Lalb_Chr02g0150891 Lupinus albus HOM05D003044 ORTHO05D001869 3.9e-13 78.2 100 53.0
Hund22391 Selenicereus undatus HOM05D003044 ORTHO05D001869 5.1e-13 77.8 122 48.4
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 5.1e-13 77.8 108 52.8
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 6.7e-13 77.4 99 51.5
Glyma.10G194700 Glycine max HOM05D003044 ORTHO05D001869 8.7e-13 77.0 101 55.4
Sabra10G0191200 Salix brachista HOM05D003044 ORTHO05D001869 8.7e-13 77.0 110 51.8
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 1.1e-12 76.6 105 50.5
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 1.5e-12 76.3 104 50.0
vmacro10333 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 1.5e-12 76.3 108 53.7
VMungo0720G1731 Vigna mungo HOM05D003044 ORTHO05D001869 1.5e-12 76.3 108 52.8
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 1.9e-12 75.9 102 55.9
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 1.9e-12 75.9 101 50.5
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.9e-12 75.9 100 49.0
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.9e-12 75.9 100 50.0
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.9e-12 75.9 100 50.0
CDE04G3330 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.5e-12 75.5 103 49.5
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.5e-12 75.5 103 50.5
Gohir.D04G019060 Gossypium hirsutum HOM05D003044 ORTHO05D001869 2.5e-12 75.5 101 48.5
Gorai.012G022700 Gossypium raimondii HOM05D003044 ORTHO05D001869 2.5e-12 75.5 101 48.5
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 3.3e-12 75.1 124 43.5
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 4.3e-12 74.7 105 52.4
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 4.3e-12 74.7 107 48.6
HanXRQChr02g0049311 Helianthus annuus HOM05D003044 ORTHO05D001869 4.3e-12 74.7 98 53.1
HanXRQChr08g0217351 Helianthus annuus HOM05D003044 ORTHO05D001869 5.7e-12 74.3 108 50.9
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 7.4e-12 73.9 108 50.0
Lj3A920T29 Lonicera japonica HOM05D003044 ORTHO05D001869 7.4e-12 73.9 109 49.5
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 7.4e-12 73.9 104 49.0
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 1.3e-11 73.2 103 52.4
Psat4g227200 Pisum sativum HOM05D003044 ORTHO05D001869 1.6e-11 72.8 102 52.0
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 2.2e-11 72.4 100 49.0
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 2.2e-11 72.4 110 49.1
Gohir.D04G019020 Gossypium hirsutum HOM05D003044 ORTHO05D001869 3.7e-11 71.6 96 49.0
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 3.7e-11 71.6 103 51.5
Oeu025606.1 Olea europaea HOM05D003044 ORTHO05D001869 4.8e-11 71.2 101 53.5
Actinidia34738 Actinidia chinensis HOM05D003044 ORTHO05D001869 8.2e-11 70.5 120 45.0
Lsat_1_v5_gn_2_106321 Lactuca sativa HOM05D003044 ORTHO05D001869 8.2e-11 70.5 113 46.0
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 8.2e-11 70.5 114 47.4
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 8.2e-11 70.5 114 49.1
VMungo0720G0604 Vigna mungo HOM05D003044 ORTHO05D001869 8.2e-11 70.5 101 49.5
SGA_v2.0_scaffold90G27707 Striga asiatica HOM05D003044 ORTHO05D001869 1.1e-10 70.1 103 50.5
Hma1.2p1_0098F.1_g048290 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.4e-10 69.7 97 49.5
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 1.8e-10 69.3 110 52.7
Ah.14g085720 Amaranthus hybridus HOM05D003044 ORTHO05D001869 2.4e-10 68.9 110 50.0
CSS0031943 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 2.4e-10 68.9 107 53.3
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 2.4e-10 68.9 103 47.6
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 3.1e-10 68.6 104 49.0
Actinidia31115 Actinidia chinensis HOM05D003044 ORTHO05D001869 4.1e-10 68.2 106 50.9
AUR62033063 Chenopodium quinoa HOM05D003044 ORTHO05D001869 4.1e-10 68.2 105 48.6
HanXRQChr11g0322921 Helianthus annuus HOM05D003044 ORTHO05D001869 4.1e-10 68.2 101 48.5
Phvul.007G136500 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 6.9e-10 67.4 101 51.5
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 9.0e-10 67.0 98 52.0
Hma1.2p1_0153F.1_g067850 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.2e-09 66.6 106 49.1
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 1.5e-09 66.2 108 46.3
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 2.6e-09 65.5 103 50.5
Rhsim03G0094000 Rhododendron simsii HOM05D003044 ORTHO05D001869 2.6e-09 65.5 120 45.8
Manes.10G059500 Manihot esculenta HOM05D003044 ORTHO05D001869 3.4e-09 65.1 124 40.3
HanXRQChr07g0201481 Helianthus annuus HOM05D003044 ORTHO05D001869 4.5e-09 64.7 106 47.2
vmacro22754 Vaccinium macrocarpon HOM05D003044 ORTHO05D001869 4.5e-09 64.7 104 50.0
HanXRQChr07g0195181 Helianthus annuus HOM05D003044 ORTHO05D001869 5.9e-09 64.3 93 50.5
SHI21256 Sapria himalayana HOM05D003044 ORTHO05D001869 5.9e-09 64.3 116 44.8
EL10Ac8g19444 Beta vulgaris HOM05D003044 ORTHO05D001869 7.6e-09 63.9 104 49.0
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 7.6e-09 63.9 102 48.0
Ah.09g231710 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.0e-08 63.5 109 49.5
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 1.3e-08 63.2 101 44.6
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 1.3e-08 63.2 126 41.3
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 1.7e-08 62.8 100 46.0
Hma1.2p1_0153F.1_g067840 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 2.9e-08 62.0 106 46.2
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 3.8e-08 61.6 144 40.3
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 1.1e-07 60.1 102 46.1
Potri.008G015350 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.1e-07 60.1 110 47.3
unitig_46.g18649 Utricularia gibba HOM05D003044 ORTHO05D001869 1.4e-07 59.7 104 46.2
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.9e-07 59.3 101 45.5
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 1.2e-06 56.6 107 45.8
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 1.2e-06 56.6 111 43.2
FvH4_7g05430 Fragaria vesca HOM05D003044 ORTHO05D001869 6.1e-06 54.3 130 41.5
Lsat_1_v5_gn_9_94741 Lactuca sativa HOM05D003044 ORTHO05D001869 6.1e-06 54.3 59 54.2
FAN10G0351 Fragaria x ananassa HOM05D003044 ORTHO05D001869 7.9e-06 53.9 128 40.6
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 7.9e-06 53.9 102 44.1
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 7.9e-06 53.9 124 39.5
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 7.9e-06 53.9 129 40.3


User provided reference genes

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