Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 2602.0 1315 100.0
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 2519.2 1316 96.4
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 2439.8 1317 92.6
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 2421.4 1239 98.4
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 2355.5 1338 88.5
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 2338.9 1313 89.6
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 2320.4 1316 87.6
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1860.5 1326 70.6
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1833.9 1328 69.9
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1807.7 1324 69.3
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1766.1 1320 67.6
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1762.7 1327 68.3
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1759.2 1319 68.4
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1753.4 1328 67.2
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1739.2 1325 66.0
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1733.0 1326 66.5
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1732.6 1329 66.7
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1728.4 1324 65.9
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1721.4 1326 66.6
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1713.4 1322 65.8
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1705.3 1328 65.4
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1702.6 1326 66.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1701.8 1327 65.1
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1695.6 1324 65.1
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1695.2 1244 69.8
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1687.9 1326 65.7
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1686.4 1256 68.3
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1686.0 1326 65.8
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1677.5 1322 65.1
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1676.0 1320 64.3
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1675.6 1325 64.2
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1671.4 1326 64.0
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1670.6 1326 64.0
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1670.2 1326 64.0
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1669.1 1325 62.8
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1667.9 1326 63.9
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1664.0 1326 63.8
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1660.6 1324 63.7
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1655.2 1323 63.7
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1652.5 1325 63.1
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1649.8 1331 63.0
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1645.2 1336 62.9
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1641.3 1325 63.2
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1640.2 1322 62.2
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1635.5 1335 63.5
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1627.5 1242 67.2
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1623.2 1321 62.3
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1621.7 1329 62.2
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1617.8 1325 61.7
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1617.1 1324 63.4
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1616.3 1321 62.4
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1614.0 1244 65.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1614.0 1322 63.0
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1609.7 1325 62.2
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1609.7 1334 60.9
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1609.3 1328 61.1
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1604.0 1322 62.1
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1601.3 1339 61.8
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1596.3 1323 62.5
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1594.7 1319 61.7
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1591.6 1254 64.4
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1588.2 1327 61.3
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1583.5 1326 61.2
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1577.0 1325 60.3
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1572.4 1327 60.7
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1564.7 1315 61.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1563.9 1327 60.6
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1562.4 1322 61.4
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1559.3 1321 60.8
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1550.0 1255 62.8
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1547.7 1280 64.5
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1517.3 1189 64.3
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1500.7 1094 70.1
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1494.9 1327 58.6
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1491.5 1327 58.3
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1491.1 1328 58.4
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1488.4 1328 58.3
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1487.6 1325 58.9
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1485.7 1329 58.2
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1484.5 1331 58.3
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1483.4 1332 58.5
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1480.7 1561 53.1
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1477.2 1101 68.0
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1473.4 1334 57.8
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1450.3 1355 56.1
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1426.4 1339 55.1
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1407.5 1325 56.4
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1393.6 1132 61.7
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1389.0 1323 53.8
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1383.6 1108 63.0
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1349.3 1092 62.4
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1340.5 1345 53.6
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1326.6 1151 59.9
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1322.4 1319 55.6
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1317.8 1325 53.0
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1192.9 861 70.5
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1191.0 942 63.8
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1172.5 1335 50.0
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1122.1 1252 48.9
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1103.2 901 62.6
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1103.2 754 74.0
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 7.4e-256 888.3 1371 39.0
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 2.5e-251 873.2 850 53.1
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 3.0e-233 813.1 1197 40.9
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.6e-229 800.8 1303 37.6
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 1.1e-227 794.7 1156 41.1
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 8.0e-210 735.3 802 50.5
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.9e-163 581.3 1500 30.1
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 7.9e-141 506.1 462 58.9
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 2.9e-135 487.6 356 68.8
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 2.8e-130 471.1 376 61.2
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 2.6e-99 368.2 313 63.3
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 4.4e-91 340.9 1450 25.5
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 5.2e-76 290.8 258 57.0
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 2.9e-74 285.0 1539 24.3
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.6e-72 277.7 196 75.5
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 1.5e-59 236.1 304 45.1
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 9.2e-57 226.9 1366 24.1
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.6e-56 226.1 167 73.1
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 6.6e-55 220.7 1375 25.2
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 8.4e-42 177.2 235 42.6
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 1.1e-41 176.8 138 68.1
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.8e-39 169.5 130 69.2
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.5e-38 165.6 220 43.6
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 3.8e-34 151.8 136 59.6
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.4e-33 149.8 289 38.8


User provided reference genes

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