Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.5e-253 879.0 439 100.0
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 1.7e-241 839.0 430 98.1
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 8.0e-231 803.5 430 93.5
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 2.5e-216 755.4 430 87.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 3.0e-201 705.3 428 83.2
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 7.3e-200 700.7 447 81.2
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.3e-168 595.5 430 74.7
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 2.4e-142 509.6 418 63.4
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.7e-138 496.1 440 60.7
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.0e-137 494.2 419 62.1
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 2.3e-137 493.0 424 61.3
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 3.9e-137 492.3 416 62.3
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.1e-137 491.9 422 62.1
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.3e-136 489.2 424 61.1
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 5.7e-136 488.4 421 61.8
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 5.7e-136 488.4 413 61.7
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 3.7e-135 485.7 418 61.7
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 6.3e-135 485.0 438 60.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.0e-132 477.6 409 60.6
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.0e-132 477.6 415 59.3
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 5.5e-131 471.9 416 61.1
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.4e-129 467.2 429 59.2
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.0e-129 466.1 445 55.3
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 5.2e-129 465.3 413 61.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 3.3e-128 462.6 429 58.5
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.3e-127 460.7 411 59.1
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.8e-127 459.5 423 56.5
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 7.0e-126 454.9 437 56.8
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 7.0e-126 454.9 445 55.1
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 9.1e-126 454.5 405 60.2
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.6e-125 453.8 421 57.0
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.3e-124 450.7 412 57.8
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.3e-124 450.7 384 63.0
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.3e-124 450.7 432 59.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.7e-124 450.3 418 58.1
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.9e-124 449.5 360 64.4
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.5e-124 448.0 412 57.8
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.5e-123 447.2 409 57.9
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.5e-123 446.4 407 57.2
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 4.2e-123 445.7 418 56.5
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.2e-123 445.7 403 61.5
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 9.4e-123 444.5 418 57.7
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.2e-122 444.1 412 58.7
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.6e-122 442.6 412 56.6
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 4.7e-122 442.2 420 56.7
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.0e-121 441.0 412 57.5
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.4e-121 440.7 385 60.0
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 5.2e-121 438.7 409 56.7
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 5.2e-121 438.7 420 56.4
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 5.2e-121 438.7 421 56.5
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 3.4e-120 436.0 425 56.5
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 8.3e-119 431.4 408 57.1
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.4e-118 429.9 413 57.4
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 7.0e-118 428.3 408 55.6
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 1.6e-117 427.2 413 56.4
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 3.5e-117 426.0 416 56.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 4.5e-117 425.6 408 55.6
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 5.9e-117 425.2 428 54.9
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 7.7e-117 424.9 442 53.4
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.7e-116 423.7 444 54.1
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 1.7e-116 423.7 435 51.5
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.2e-116 423.3 419 55.1
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 8.5e-116 421.4 414 55.1
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 8.5e-116 421.4 415 56.4
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.1e-115 421.0 415 54.7
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 4.2e-115 419.1 360 60.6
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 7.2e-115 418.3 433 50.8
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 1.2e-114 417.5 354 63.0
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 1.6e-114 417.2 412 55.3
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.7e-114 416.4 415 54.2
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.8e-113 411.4 413 53.5
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.2e-112 411.0 433 52.0
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.5e-112 410.6 442 52.3
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 2.0e-112 410.2 484 48.3
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.7e-111 407.1 413 54.0
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 2.8e-111 406.4 358 58.4
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 3.7e-111 406.0 410 54.4
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 8.3e-111 404.8 414 53.6
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.0e-108 397.9 387 54.5
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 5.0e-108 395.6 389 55.8
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 5.7e-104 382.1 452 49.6
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 7.5e-104 381.7 357 56.9
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 2.7e-101 373.2 373 53.6
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 7.8e-101 371.7 356 56.5
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 2.3e-100 370.2 335 58.5
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 6.6e-100 368.6 399 51.9
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.6e-100 368.2 423 49.2
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 2.1e-98 363.6 395 52.4
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.7e-95 352.8 348 54.0
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.4e-94 350.9 382 50.8
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.5e-91 340.9 336 54.5
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.0e-89 332.8 385 50.1
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 1.6e-82 310.8 424 45.3
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 2.1e-82 310.5 312 54.2
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 6.2e-82 308.9 428 42.3
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 5.2e-81 305.8 383 49.6
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.4e-78 297.7 515 37.9
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 3.9e-76 289.7 274 55.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 2.8e-74 283.5 216 64.4
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 4.7e-74 282.7 274 55.8
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.2e-72 278.1 345 47.8
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 9.3e-70 268.5 513 36.1
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.6e-69 267.7 293 50.2
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.3e-63 248.1 321 46.4
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-62 245.0 182 66.5
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-62 244.2 187 64.7
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 2.1e-61 240.7 439 37.1
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 8.7e-60 235.3 236 54.2
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 9.6e-59 231.9 425 38.6
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 3.6e-58 229.9 258 50.8
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 1.4e-57 228.0 274 47.4
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 2.4e-57 227.3 393 39.7
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 4.9e-55 219.5 309 43.7
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 2.1e-53 214.2 308 45.8
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 3.0e-52 210.3 418 36.6
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.4e-46 191.4 166 60.2
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 6.7e-44 182.6 204 50.0
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 3.7e-42 176.8 276 40.9
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 1.2e-40 171.8 165 55.8
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.6e-40 170.6 196 48.5
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 5.0e-39 166.4 420 33.6
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.2e-32 145.2 155 51.6
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 2.6e-32 144.1 110 62.7
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 4.5e-32 143.3 421 30.2
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.8e-31 140.2 108 61.1
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 6.5e-31 139.4 411 27.7
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 9.4e-30 135.6 115 62.6
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.8e-28 131.3 89 67.4
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.5e-27 128.3 111 59.5
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 3.3e-27 127.1 125 53.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 7.4e-27 125.9 789 22.4
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.8e-26 124.0 91 67.0
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 8.5e-23 112.5 135 48.1
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 9.4e-22 109.0 150 44.7
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 2.8e-18 97.4 111 49.5
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.7e-15 88.2 315 30.2
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 3.6e-13 80.5 295 27.8
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 6.7e-12 76.3 273 27.8
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.9e-06 58.2 49 63.3


User provided reference genes

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