Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 4.3e-67 258.1 130 100.0
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 2.2e-23 112.8 296 32.8
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.5e-23 110.9 131 51.9
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.5e-23 110.9 131 51.9
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.5e-23 110.9 131 51.9
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.5e-23 110.9 131 51.9
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.5e-23 110.9 131 51.9
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 8.5e-23 110.9 131 51.9
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 3.2e-22 109.0 131 51.1
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 7.2e-22 107.8 131 50.4
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 7.2e-22 107.8 131 50.4
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.6e-21 106.7 128 51.6
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 1.4e-20 103.6 128 50.8
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.8e-20 103.2 128 50.8
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 1.8e-20 103.2 128 50.8
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 2.3e-20 102.8 126 50.0
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 3.0e-20 102.4 131 48.9
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 5.2e-20 101.7 257 33.5
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 5.2e-20 101.7 125 49.6
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 5.2e-20 101.7 125 49.6
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 6.8e-20 101.3 131 48.1
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 6.8e-20 101.3 131 48.1
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 6.8e-20 101.3 131 48.1
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 6.8e-20 101.3 125 49.6
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 6.8e-20 101.3 128 49.2
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 6.8e-20 101.3 125 49.6
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 6.8e-20 101.3 125 49.6
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 8.8e-20 100.9 125 48.8
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.8e-20 100.9 126 50.8
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 8.8e-20 100.9 128 49.2
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 1.2e-19 100.5 131 47.3
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 50.0
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.0e-19 99.8 126 49.2
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 2.6e-19 99.4 127 49.6
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.6e-19 99.4 124 49.2
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.6e-19 99.4 124 49.2
Solyc00g500102.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 3.4e-19 99.0 56 85.7
Solyc00g500119.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 3.4e-19 99.0 56 85.7
Solyc00g500276.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 3.4e-19 99.0 56 85.7
Solyc00g500360.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 3.4e-19 99.0 56 85.7
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 3.4e-19 99.0 56 85.7
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 5.7e-19 98.2 126 50.8
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.3e-18 97.1 125 49.6
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 2.2e-18 96.3 123 48.8
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 8.3e-18 94.4 84 60.7
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 1.4e-17 93.6 55 87.3
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 3.1e-17 92.4 57 86.0
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 9.2e-17 90.9 54 88.9
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.2e-17 90.9 64 73.4
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 3.5e-16 89.0 54 85.2
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 3.5e-16 89.0 111 49.5
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 5.9e-16 88.2 52 90.4
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 3.8e-15 85.5 50 90.0
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.0e-15 85.1 57 78.9
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 5.0e-15 85.1 50 90.0
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 1.1e-14 84.0 122 45.1
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 1.9e-14 83.2 54 83.3
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.3e-14 81.3 57 78.9
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 2.8e-13 79.3 52 80.8
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 2.8e-13 79.3 54 81.5
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 2.8e-13 79.3 54 81.5
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 6.1e-13 78.2 52 82.7
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 6.1e-13 78.2 52 80.8
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 6.1e-13 78.2 52 80.8
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.0e-13 77.8 50 84.0
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 8.0e-13 77.8 50 84.0
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 1.0e-12 77.4 54 79.6
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 2.6e-11 72.8 54 74.1
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.3e-10 70.5 54 66.7
Solyc12g035825.1 Solanum lycopersicum HOM05D004291 ORTHO05D010659 4.9e-10 68.6 52 65.4
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 6.4e-10 68.2 47 80.9
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.8e-09 66.6 38 86.8
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.4e-09 66.2 40 82.5
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 3.2e-09 65.9 50 70.0
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.0e-09 64.7 35 85.7
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 1.2e-08 63.9 45 80.0
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 4.3e-06 55.5 46 65.2
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.6e-06 55.1 100 46.0


User provided reference genes

Program Settings