Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g024110.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.2e-16 86.3 42 100.0
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 1.2e-11 72.0 41 80.5
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 1.2e-11 72.0 41 80.5
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.6e-11 71.6 41 78.0
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 1.6e-11 71.6 41 78.0
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 2.7e-11 70.9 41 78.0
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 6.0e-11 69.7 41 75.6
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 6.0e-11 69.7 41 78.0
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 1.0e-10 68.9 41 73.2
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 1.0e-10 68.9 41 73.2
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 1.0e-10 68.9 41 75.6
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 1.0e-10 68.9 41 75.6
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.8e-10 68.2 41 70.7
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 1.8e-10 68.2 41 73.2
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 2.3e-10 67.8 41 70.7
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 70.7
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 70.7
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 73.2
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 70.7
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 70.7
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 70.7
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 3.0e-10 67.4 41 70.7
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 3.9e-10 67.0 41 70.7
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 3.9e-10 67.0 41 70.7
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 5.1e-10 66.6 41 68.3
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 5.1e-10 66.6 41 68.3
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 5.1e-10 66.6 41 70.7
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 5.1e-10 66.6 41 68.3
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 5.1e-10 66.6 41 68.3
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 6.7e-10 66.2 41 70.7
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 6.7e-10 66.2 41 70.7
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 6.7e-10 66.2 41 70.7
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 6.7e-10 66.2 41 70.7
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 6.7e-10 66.2 41 68.3
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 8.7e-10 65.9 41 65.9
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 8.7e-10 65.9 41 68.3
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 8.7e-10 65.9 41 68.3
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 65.9
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 65.9
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 65.9
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 65.9
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 1.1e-09 65.5 41 70.7
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 1.5e-09 65.1 41 68.3
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.5e-09 65.1 41 68.3
AUR62041380 Chenopodium quinoa HOM05D004229 ORTHO05D005468 1.5e-09 65.1 41 68.3
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 1.5e-09 65.1 41 65.9
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 68.3
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 68.3
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 1.9e-09 64.7 41 65.9
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 2.5e-09 64.3 41 68.3
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 2.5e-09 64.3 41 65.9
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 2.5e-09 64.3 40 67.5
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 2.5e-09 64.3 41 65.9
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 2.5e-09 64.3 41 63.4
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 2.5e-09 64.3 41 63.4
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 2.5e-09 64.3 41 68.3
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.3e-09 63.9 41 63.4
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 3.3e-09 63.9 41 68.3
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 3.3e-09 63.9 41 63.4
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 3.3e-09 63.9 41 65.9
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 3.3e-09 63.9 41 65.9
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 4.3e-09 63.5 41 63.4
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 4.3e-09 63.5 41 65.9
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 4.3e-09 63.5 41 65.9
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.3e-09 63.5 41 68.3
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 4.3e-09 63.5 41 68.3
Cpa.g.sc912.1 Carica papaya HOM05D004229 ORTHO05D005468 5.6e-09 63.2 41 65.9
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 5.6e-09 63.2 41 65.9
AUR62026961 Chenopodium quinoa HOM05D004229 ORTHO05D005468 7.4e-09 62.8 41 65.9
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 7.4e-09 62.8 41 65.9
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 7.4e-09 62.8 41 68.3
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 7.4e-09 62.8 41 68.3
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 7.4e-09 62.8 41 65.9
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 7.4e-09 62.8 41 63.4
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 1.3e-08 62.0 41 63.4
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 1.3e-08 62.0 41 61.0
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.6e-08 61.6 41 63.4
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 1.6e-08 61.6 41 65.9
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 1.6e-08 61.6 41 63.4
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 2.1e-08 61.2 41 61.0
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 2.8e-08 60.8 41 61.0
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 3.7e-08 60.5 41 61.0
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.8e-08 60.1 41 61.0
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 6.2e-08 59.7 41 61.0
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 6.2e-08 59.7 36 72.2
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 1.1e-07 58.9 41 58.5
QL08p054691 Quercus lobata HOM05D004229 ORTHO05D005468 1.1e-07 58.9 38 63.2
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 1.4e-07 58.5 41 58.5
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 4.0e-07 57.0 40 57.5
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 1.5e-06 55.1 36 63.9
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 2.0e-06 54.7 41 53.7
FAN04G2028 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.6e-06 54.3 38 60.5
FAN13G0469 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.6e-06 54.3 39 59.0
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 2.6e-06 54.3 41 56.1
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 3.4e-06 53.9 39 59.0
RcHm_v2.0_Chr7g0237381 Rosa chinensis HOM05D004229 ORTHO05D005468 5.8e-06 53.1 41 56.1
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 7.6e-06 52.8 41 51.2
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 7.6e-06 52.8 41 53.7
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 7.6e-06 52.8 41 51.2
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 1.0e-05 52.4 36 61.1


User provided reference genes

Program Settings