Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.8e-72 275.8 135 100.0
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.9e-62 241.9 125 93.6
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.4e-61 239.6 125 92.8
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.8e-56 222.6 125 87.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 3.3e-42 175.3 125 67.2
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 2.1e-33 146.0 124 57.3
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.7e-28 129.0 133 55.6
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.3e-27 126.7 135 54.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.0e-27 125.6 124 49.2
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 5.1e-27 124.8 126 49.2
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-24 117.1 130 43.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.8e-24 116.3 130 43.8
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.8e-24 116.3 124 47.6
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.1e-24 115.5 130 42.3
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 3.1e-24 115.5 110 52.7
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 4.0e-24 115.2 123 45.5
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.5e-23 113.2 127 44.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 9.9e-23 110.5 133 42.1
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.3e-22 110.2 130 44.6
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.8e-22 108.6 130 45.4
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.9e-21 106.3 116 44.8
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.4e-21 105.9 119 47.1
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 3.2e-21 105.5 129 46.5
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.6e-20 103.2 128 42.2
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 6.0e-20 101.3 132 40.9
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.3e-19 100.1 133 42.1
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.9e-19 98.6 132 40.2
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 5.1e-19 98.2 112 46.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 6.7e-19 97.8 136 41.9
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.1e-18 97.1 127 40.2
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.5e-18 96.7 127 41.7
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.5e-18 96.7 129 40.3
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.9e-18 96.3 126 42.1
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.9e-18 96.3 126 37.3
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.3e-18 95.5 128 37.5
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 3.3e-18 95.5 114 40.4
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.3e-18 95.1 98 46.9
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 4.3e-18 95.1 126 42.1
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.3e-17 93.6 116 40.5
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.6e-17 93.2 119 39.5
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 3.6e-17 92.0 126 40.5
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 4.8e-17 91.7 116 38.8
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 8.1e-17 90.9 131 38.9
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-16 90.5 96 43.8
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.1e-16 90.5 119 38.7
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.8e-16 89.7 129 37.2
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 4.0e-16 88.6 123 37.4
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 4.0e-16 88.6 112 41.1
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 4.0e-16 88.6 118 39.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.3e-16 88.2 113 38.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 9.0e-16 87.4 129 37.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 9.0e-16 87.4 127 33.9
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 9.0e-16 87.4 129 37.2
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.2e-15 87.0 128 38.3
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 1.2e-15 87.0 128 38.3
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.5e-15 86.7 128 36.7
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.5e-15 86.7 122 36.9
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 2.0e-15 86.3 126 36.5
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 3.4e-15 85.5 133 36.8
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 4.5e-15 85.1 132 38.6
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 4.5e-15 85.1 127 33.9
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.8e-15 84.7 135 38.5
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 9.9e-15 84.0 115 38.3
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 9.9e-15 84.0 128 35.9
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.3e-14 83.6 122 33.6
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.3e-14 83.6 115 33.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.3e-14 83.6 128 35.2
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.2e-14 82.8 135 37.8
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-14 82.8 135 38.5
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-14 82.8 135 38.5
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-14 82.8 135 37.8
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.2e-14 82.8 123 34.1
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 4.9e-14 81.6 118 34.7
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.9e-14 81.6 96 47.9
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 8.4e-14 80.9 113 38.9
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 8.4e-14 80.9 127 33.9
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 8.4e-14 80.9 127 33.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 8.4e-14 80.9 135 36.3
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 8.4e-14 80.9 93 44.1
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.4e-13 80.1 128 33.6
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.4e-13 80.1 127 33.1
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 1.9e-13 79.7 128 33.6
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.2e-13 78.6 100 43.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 4.2e-13 78.6 110 38.2
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 5.5e-13 78.2 99 40.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 7.1e-13 77.8 124 37.1
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 7.1e-13 77.8 127 35.4
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 9.3e-13 77.4 89 43.8
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.2e-12 77.0 101 41.6
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.6e-12 76.6 94 38.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 2.7e-12 75.9 132 35.6
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 7.9e-12 74.3 102 37.3
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.0e-11 73.9 102 37.3
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.0e-11 73.9 102 37.3
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.3e-11 73.6 121 35.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 3.9e-11 72.0 122 36.1
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 3.9e-11 72.0 60 50.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.9e-10 69.7 123 34.1
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.9e-10 69.7 67 46.3
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.6e-09 66.6 128 31.2
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 8.2e-09 64.3 75 41.3
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-08 63.9 54 51.9
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-08 63.9 66 45.5
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.1e-08 63.9 54 51.9
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.1e-08 63.9 54 51.9
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.1e-08 63.9 54 51.9
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.1e-08 62.4 126 31.0
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.5e-07 60.1 54 50.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.5e-07 60.1 123 31.7
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.9e-06 55.8 94 33.0
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.9e-06 55.1 120 31.7
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 8.4e-06 54.3 43 48.8


User provided reference genes

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