Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.3e-277 959.1 488 100.0
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 5.0e-274 947.2 488 99.0
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.8e-263 912.1 488 94.5
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.1e-262 909.4 488 95.7
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-249 866.3 490 90.0
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 6.8e-247 857.1 490 89.2
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.6e-230 802.0 484 83.9
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.1e-199 700.3 503 72.4
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 4.2e-196 688.3 506 70.6
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 6.6e-194 681.0 543 66.1
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.3e-193 678.7 498 70.7
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.6e-192 676.4 497 70.8
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 4.8e-192 674.9 496 71.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 1.4e-191 673.3 478 71.8
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.8e-191 672.9 508 68.5
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.5e-190 669.8 493 70.6
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 4.5e-190 668.3 509 69.2
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 2.9e-189 665.6 509 68.6
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.2e-187 660.2 497 68.8
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.7e-187 659.1 498 68.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 4.6e-187 658.3 508 67.5
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-185 653.3 507 67.5
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.3e-184 650.2 502 67.9
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 4.8e-184 648.3 440 73.4
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 4.8e-184 648.3 502 68.1
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.1e-183 647.1 491 69.9
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.1e-183 647.1 488 69.5
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.4e-183 646.7 440 74.8
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.0e-183 645.2 494 69.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.3e-183 644.8 495 68.3
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.2e-182 643.7 473 69.6
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-182 643.3 507 67.3
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 5.8e-182 641.3 496 67.9
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.7e-181 639.8 462 71.2
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.2e-181 639.4 489 68.3
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 3.8e-181 638.6 486 67.1
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 6.5e-181 637.9 485 68.5
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 3.2e-180 635.6 511 66.1
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 2.1e-179 632.9 483 68.7
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 4.6e-179 631.7 507 66.7
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 4.6e-179 631.7 486 66.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 7.9e-179 630.9 460 70.7
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 1.3e-178 630.2 482 67.6
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 2.3e-178 629.4 490 67.6
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 3.9e-178 628.6 508 67.1
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 9.6e-177 624.0 470 67.0
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 9.6e-177 624.0 492 66.7
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.6e-176 623.2 409 76.0
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.1e-175 620.5 465 67.5
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.8e-175 619.8 521 63.9
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 6.9e-175 617.8 505 64.0
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.2e-174 617.1 464 67.2
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 1.2e-174 617.1 470 68.1
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.5e-174 616.7 462 67.5
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.4e-174 615.5 466 66.3
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.4e-172 610.1 508 64.4
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 2.5e-172 609.4 480 67.5
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 5.5e-172 608.2 462 66.5
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 5.5e-172 608.2 437 69.6
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 5.5e-172 608.2 461 69.0
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 5.5e-172 608.2 511 64.6
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.2e-172 607.8 493 66.7
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.6e-171 606.7 458 68.1
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 3.5e-171 605.5 475 67.2
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 7.9e-171 604.4 493 66.1
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 7.9e-171 604.4 488 66.8
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.0e-170 604.0 440 68.6
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 1.3e-170 603.6 462 66.0
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.3e-170 603.6 462 66.0
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 3.0e-170 602.4 399 76.7
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 5.1e-170 601.7 488 65.8
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.1e-170 601.7 443 70.0
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.5e-169 600.1 493 65.7
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.3e-169 599.0 493 66.1
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.6e-168 596.7 415 72.8
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 8.2e-168 594.3 464 67.5
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.1e-167 594.0 525 61.1
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 5.3e-167 591.7 472 67.4
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.7e-165 586.6 439 69.2
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 4.6e-163 578.6 496 63.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 6.7e-162 574.7 482 63.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 3.3e-161 572.4 443 65.7
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 7.4e-161 571.2 545 59.4
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.7e-160 570.1 374 77.0
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.1e-156 557.4 462 62.1
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 5.5e-156 555.1 462 61.9
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.8e-152 542.7 422 67.8
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 8.2e-152 541.2 414 67.9
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 9.1e-151 537.7 555 53.9
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 8.5e-149 531.2 403 69.5
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 6.1e-147 525.0 409 66.7
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 3.1e-143 512.7 496 59.1
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 5.5e-140 501.9 451 58.3
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.5e-137 493.8 451 57.9
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 2.2e-136 490.0 407 61.7
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.6e-134 483.8 443 59.1
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 2.0e-134 483.4 347 67.4
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 8.5e-133 478.0 306 75.8
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.1e-131 473.4 421 58.0
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 5.7e-129 465.3 365 66.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 5.2e-122 442.2 359 63.5
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.3e-116 421.8 340 62.1
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.0e-114 417.9 446 50.9
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 9.8e-113 411.4 503 47.7
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 8.3e-112 408.3 366 59.0
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.3e-108 396.4 442 50.5
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 4.9e-104 382.5 271 70.5
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.9e-104 382.5 391 52.2
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.4e-103 380.9 438 49.3
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 4.4e-97 359.4 387 49.1
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 2.2e-96 357.1 361 60.1
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.9e-96 355.9 254 69.7
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 4.9e-88 329.3 440 43.9
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.1e-82 311.6 331 52.9
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.5e-76 291.2 274 56.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 1.6e-70 271.2 356 45.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.3e-64 251.5 409 37.7
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.0e-61 240.4 307 46.9
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 8.7e-53 212.2 459 30.9
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.1e-34 152.1 122 67.2
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.5e-31 141.0 130 61.5
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 5.5e-31 139.8 126 58.7
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 9.4e-31 139.0 189 45.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.1e-26 125.6 222 37.8
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.5e-23 115.2 160 50.6
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.5e-23 115.2 64 78.1
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 2.2e-19 101.3 133 49.6
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.8e-19 100.1 204 34.3
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 2.9e-16 90.9 67 61.2
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.1e-15 89.0 157 42.7
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 7.2e-15 86.3 88 51.1
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.0e-13 82.4 95 44.2
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.4e-10 72.0 54 63.0
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 3.1e-10 70.9 292 25.3
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.3e-08 64.7 77 54.5
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 3.3e-07 60.8 73 53.4


User provided reference genes

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