Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g008030.1 Solanum lycopersicum HOM05D005236 ORTHO05D006557 7.0e-101 370.5 179 100.0
Sopen05g003880 Solanum pennellii HOM05D005236 ORTHO05D006557 2.3e-96 355.5 174 97.7
Nitab4.5_0000742g0190 Nicotiana tabacum HOM05D005236 ORTHO05D006557 1.1e-80 303.5 174 81.0
Peaxi162Scf00159g00077 Petunia axillaris HOM05D005236 ORTHO05D006557 7.6e-79 297.4 178 78.1
CAN.G1298.25 Capsicum annuum HOM05D005236 ORTHO05D006557 2.9e-78 295.4 174 81.0
Dinv14429 Davidia involucrata HOM05D005236 ORTHO05D006557 1.4e-37 160.2 186 47.3
CSS0043470 Camellia sinensis var. sinensis HOM05D005236 ORTHO05D006557 6.7e-35 151.4 186 44.1
Cc11_g08660 Coffea canephora HOM05D005236 ORTHO05D006557 1.5e-31 140.2 181 43.1
Actinidia13577 Actinidia chinensis HOM05D005236 ORTHO05D006557 2.0e-31 139.8 165 47.3
GSVIVG01011753001 Vitis vinifera HOM05D005236 ORTHO05D006557 2.6e-31 139.4 174 44.8
Rhsim09G0066800 Rhododendron simsii HOM05D005236 ORTHO05D006557 6.1e-28 128.3 201 38.8
Gohir.A03G121000 Gossypium hirsutum HOM05D005236 ORTHO05D006557 3.9e-27 125.6 213 36.2
Gohir.D02G144400 Gossypium hirsutum HOM05D005236 ORTHO05D006557 8.8e-27 124.4 213 36.2
Gorai.005G161600 Gossypium raimondii HOM05D005236 ORTHO05D006557 8.8e-27 124.4 213 36.2
RcHm_v2.0_Chr4g0441331 Rosa chinensis HOM05D005236 ORTHO05D006557 8.8e-27 124.4 177 44.1
Duzib251G0654 Durio zibethinus HOM05D005236 ORTHO05D006557 2.8e-25 119.4 214 36.4
FvH4_4g32470 Fragaria vesca HOM05D005236 ORTHO05D006557 1.8e-24 116.7 179 41.3
FAN12G1300 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.8e-24 116.7 179 41.3
Thecc.02G282100 Theobroma cacao HOM05D005236 ORTHO05D006557 4.1e-24 115.5 213 34.7
TAR622G0787 Trochodendron aralioides HOM05D005236 ORTHO05D006557 9.1e-24 114.4 186 37.6
FAN17G1995 Fragaria x ananassa HOM05D005236 ORTHO05D006557 2.0e-23 113.2 179 40.8
FAN22G1445 Fragaria x ananassa HOM05D005236 ORTHO05D006557 3.5e-23 112.5 179 40.8
Atru.chr11.574_Atru.chr11.575 Acer truncatum HOM05D005236 ORTHO05D006557 7.7e-23 111.3 184 38.0
FAN07G1852 Fragaria x ananassa HOM05D005236 ORTHO05D006557 1.0e-22 110.9 179 40.8
MD13G1025100 Malus domestica HOM05D005236 ORTHO05D006557 2.2e-22 109.8 174 39.7
SalBow8G3693 Salvia bowleyana HOM05D005236 ORTHO05D006557 8.5e-22 107.8 187 35.3
SalBow8G4798 Salvia bowleyana HOM05D005236 ORTHO05D006557 8.5e-22 107.8 187 35.3
Lj3C872G3 Lonicera japonica HOM05D005236 ORTHO05D006557 1.5e-21 107.1 217 33.6
CiPaw.05G250200 Carya illinoinensis HOM05D005236 ORTHO05D006557 2.5e-21 106.3 174 40.2
Migut.L00644 Erythranthe guttata HOM05D005236 ORTHO05D006557 7.2e-21 104.8 186 36.6
Migut.L00833 Erythranthe guttata HOM05D005236 ORTHO05D006557 9.4e-21 104.4 186 36.6
Prupe.1G325100 Prunus persica HOM05D005236 ORTHO05D006557 2.1e-20 103.2 175 38.3
MBI10_g08556_MAGBIO Magnolia biondii HOM05D005236 ORTHO05D006557 4.7e-20 102.1 201 32.8
Manes.15G127900 Manihot esculenta HOM05D005236 ORTHO05D006557 4.7e-20 102.1 208 34.1
Phvul.003G032801 Phaseolus vulgaris HOM05D005236 ORTHO05D006557 6.1e-20 101.7 187 38.0
arahy.Tifrunner.gnm1.ann1.KH05JX Arachis hypogaea HOM05D005236 ORTHO05D006557 1.8e-19 100.1 166 33.7
COL.COLO4_20489 Corchorus olitorius HOM05D005236 ORTHO05D006557 2.3e-19 99.8 237 31.6
arahy.Tifrunner.gnm1.ann1.X3V98R Arachis hypogaea HOM05D005236 ORTHO05D006557 8.8e-19 97.8 166 33.1
MD16G1027600 Malus domestica HOM05D005236 ORTHO05D006557 8.8e-19 97.8 175 36.0
Ciclev10017747m.g Citrus clementina HOM05D005236 ORTHO05D006557 2.6e-18 96.3 176 35.2
Glyma.07G164900 Glycine max HOM05D005236 ORTHO05D006557 2.6e-18 96.3 187 34.8
Potri.010G112500 Populus trichocarpa HOM05D005236 ORTHO05D006557 2.6e-18 96.3 211 33.6
Thhalv10000760m.g Eutrema salsugineum HOM05D005236 ORTHO05D006557 3.4e-18 95.9 174 33.9
SGA_v2.0_scaffold50G18498 Striga asiatica HOM05D005236 ORTHO05D006557 4.4e-18 95.5 189 35.4
CANSAT64G0788 Cannabis sativa HOM05D005236 ORTHO05D006557 5.7e-18 95.1 167 38.3
Sc14g0007110 Simmondsia chinensis HOM05D005236 ORTHO05D006557 5.7e-18 95.1 179 36.3
MSTRG.7621 Avicennia marina HOM05D005236 ORTHO05D006557 9.8e-18 94.4 186 30.1
Carub.0005s0040 Capsella rubella HOM05D005236 ORTHO05D006557 1.7e-17 93.6 174 33.3
Sed0013091 Sechium edule HOM05D005236 ORTHO05D006557 6.3e-17 91.7 179 36.3
TPR.G36938 Trifolium pratense HOM05D005236 ORTHO05D006557 8.3e-17 91.3 183 32.8
AUR62038508 Chenopodium quinoa HOM05D005236 ORTHO05D006557 1.1e-16 90.9 179 33.5
EL10Ac6g14212 Beta vulgaris HOM05D005236 ORTHO05D006557 1.8e-16 90.1 181 34.8
Ca_12599_v3 Cicer arietinum L. HOM05D005236 ORTHO05D006557 4.1e-16 89.0 176 34.7
ATR0598G134 Amborella trichopoda HOM05D005236 ORTHO05D006557 7.0e-16 88.2 209 32.1
Medtr1g031140 Medicago truncatula HOM05D005236 ORTHO05D006557 7.0e-16 88.2 171 35.1
DCAR_007297 Daucus carota HOM05D005236 ORTHO05D006557 1.2e-15 87.4 232 28.4
Hma1.2p1_0096F.1_g047840 Hydrangea macrophylla HOM05D005236 ORTHO05D006557 1.6e-15 87.0 176 36.4
Lj2g0001419 Lotus japonicus HOM05D005236 ORTHO05D006557 1.6e-15 87.0 158 37.3
AUR62014142 Chenopodium quinoa HOM05D005236 ORTHO05D006557 2.7e-15 86.3 180 32.8
ECA246G1132 Erigeron canadensis HOM05D005236 ORTHO05D006557 4.5e-15 85.5 148 37.2
Lalb_Chr10g0096161 Lupinus albus HOM05D005236 ORTHO05D006557 5.9e-15 85.1 182 30.2
MELO3C018322.2 Cucumis melo HOM05D005236 ORTHO05D006557 7.7e-15 84.7 177 32.2
CsaV3_5G013670 Cucumis sativus L. HOM05D005236 ORTHO05D006557 1.3e-14 84.0 179 33.5
CARHR143960 Cardamine hirsuta HOM05D005236 ORTHO05D006557 1.7e-14 83.6 177 31.6
TWI79G0143 Tripterygium wilfordii HOM05D005236 ORTHO05D006557 2.9e-14 82.8 175 34.3
Hund24974 Selenicereus undatus HOM05D005236 ORTHO05D006557 1.5e-13 80.5 181 33.1
AL5G10420 Arabidopsis lyrata HOM05D005236 ORTHO05D006557 2.5e-13 79.7 180 30.6
AT2G01440 Arabidopsis thaliana HOM05D005236 ORTHO05D006557 7.2e-13 78.2 183 30.1
Sp2g12880 Schrenkiella parvula HOM05D005236 ORTHO05D006557 2.1e-12 76.6 174 30.5
Ah.03g137280 Amaranthus hybridus HOM05D005236 ORTHO05D006557 2.7e-12 76.3 180 30.0
BcaC06g31307 Brassica carinata HOM05D005236 ORTHO05D006557 2.7e-12 76.3 142 33.8
HanXRQChr15g0484551 Helianthus annuus HOM05D005236 ORTHO05D006557 2.7e-12 76.3 184 31.0
Aa31LG2G8500 Aethionema arabicum HOM05D005236 ORTHO05D006557 4.7e-12 75.5 185 31.4
Aqoxy3G00124 Aquilegia oxysepala HOM05D005236 ORTHO05D006557 4.7e-12 75.5 193 28.5
Lsat_1_v5_gn_3_54941 Lactuca sativa HOM05D005236 ORTHO05D006557 6.1e-12 75.1 185 35.7
Eucgr.G02185 Eucalyptus grandis HOM05D005236 ORTHO05D006557 1.0e-11 74.3 185 30.3
BcaC06g34177 Brassica carinata HOM05D005236 ORTHO05D006557 3.0e-11 72.8 177 30.5
C07p31870 Brassica napus HOM05D005236 ORTHO05D006557 3.0e-11 72.8 177 30.5
Psat6g043400 Pisum sativum HOM05D005236 ORTHO05D006557 4.0e-11 72.4 186 32.8
BolC7t43733H Brassica oleracea HOM05D005236 ORTHO05D006557 3.4e-10 69.3 177 29.4
A06p44440 Brassica napus HOM05D005236 ORTHO05D006557 5.4e-08 62.0 141 31.9
BraA06t27318Z Brassica rapa HOM05D005236 ORTHO05D006557 5.4e-08 62.0 141 31.9


User provided reference genes

Program Settings