Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 2.1e-224 781.9 376 100.0
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.4e-215 751.9 376 95.5
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 3.3e-209 731.5 415 86.3
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 5.1e-186 654.4 380 81.1
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 6.7e-186 654.1 379 81.3
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 2.5e-185 652.1 378 80.7
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 7.4e-185 650.6 380 80.0
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 3.7e-184 648.3 381 81.1
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.2e-182 643.3 380 78.9
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 2.0e-182 642.5 380 78.4
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 1.7e-181 639.4 380 79.7
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 2.9e-181 638.6 380 80.0
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 3.2e-180 635.2 380 79.5
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.1e-179 632.5 380 78.7
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.8e-178 629.4 376 82.4
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 3.0e-178 628.6 377 78.8
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 3.0e-178 628.6 375 78.1
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 3.9e-178 628.2 379 78.4
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.0e-177 625.9 378 76.5
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 7.4e-177 624.0 383 78.6
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 9.7e-177 623.6 378 76.7
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 4.1e-175 618.2 380 76.8
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 5.3e-175 617.8 380 76.6
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.2e-174 616.7 380 74.7
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 1.5e-174 616.3 378 75.9
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.0e-174 615.9 380 76.6
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 2.6e-174 615.5 380 76.1
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 2.6e-174 615.5 380 76.3
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 3.5e-174 615.1 380 76.8
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.8e-173 611.7 380 75.8
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 8.5e-173 610.5 382 75.9
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.1e-172 610.1 376 75.0
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 5.5e-172 607.8 377 76.1
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 7.2e-172 607.4 375 76.5
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 9.4e-172 607.1 380 75.0
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.6e-171 606.3 376 74.5
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.1e-171 605.9 375 76.0
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 6.1e-171 604.4 378 74.1
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.0e-170 603.6 378 74.3
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.8e-170 602.8 378 73.5
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 1.8e-170 602.8 389 74.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 2.3e-170 602.4 384 74.0
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.0e-170 602.1 378 73.8
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 5.2e-170 601.3 378 73.8
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 5.2e-170 601.3 378 73.8
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 5.2e-170 601.3 378 73.8
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 5.2e-170 601.3 378 73.8
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 6.7e-170 600.9 375 74.9
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 6.7e-170 600.9 378 73.5
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.1e-169 600.1 375 74.9
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 4.4e-169 598.2 378 73.3
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 4.4e-169 598.2 378 73.3
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 9.7e-169 597.0 376 75.0
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.2e-168 595.9 373 75.6
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 7.0e-167 590.9 380 72.6
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 7.0e-167 590.9 379 74.1
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.6e-166 589.7 370 74.9
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 3.5e-166 588.6 375 73.1
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.5e-166 588.6 390 74.6
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 5.9e-166 587.8 380 74.2
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 5.9e-166 587.8 376 73.1
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 2.5e-164 582.4 370 73.0
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 5.5e-164 581.3 386 71.2
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.2e-163 580.1 359 76.9
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 7.5e-161 570.9 342 78.7
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.1e-159 567.0 380 71.3
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 5.4e-159 564.7 395 70.1
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 4.5e-158 561.6 328 81.7
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.9e-157 558.9 407 65.8
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 2.9e-157 558.9 368 70.4
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 5.0e-157 558.1 380 71.8
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 6.5e-157 557.8 370 71.6
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.2e-156 555.4 357 74.5
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 5.5e-156 554.7 381 70.9
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 4.7e-155 551.6 381 69.8
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 2.3e-154 549.3 340 76.5
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 3.7e-152 542.0 389 68.6
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 4.1e-151 538.5 257 98.8
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 7.0e-151 537.7 380 69.2
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.6e-150 536.6 384 69.0
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 1.6e-150 536.6 336 75.9
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 9.5e-148 527.3 363 69.4
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 9.5e-148 527.3 380 67.9
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 1.2e-147 526.9 281 85.1
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.6e-147 526.6 380 67.4
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 6.1e-147 524.6 370 67.0
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.0e-146 523.9 326 75.8
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.0e-146 523.9 379 67.5
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 2.3e-146 522.7 369 68.3
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.0e-146 521.9 336 72.6
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 8.9e-146 520.8 373 67.3
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 8.9e-146 520.8 375 67.2
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 2.6e-145 519.2 369 66.4
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.9e-144 515.8 370 68.1
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.9e-144 515.8 380 66.8
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 1.1e-143 513.8 381 66.1
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 6.6e-141 504.6 377 65.0
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 6.6e-141 504.6 377 65.0
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 1.1e-140 503.8 377 65.0
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 1.9e-140 503.1 377 65.0
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 1.9e-140 503.1 354 71.2
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 4.3e-140 501.9 377 65.0
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 2.8e-139 499.2 377 65.0
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.2e-137 493.8 377 63.1
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.5e-137 493.4 377 63.4
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.3e-136 490.3 378 61.4
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 2.7e-134 482.6 379 62.3
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 2.7e-134 482.6 379 62.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 4.3e-132 475.3 253 85.4
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 8.1e-131 471.1 380 61.1
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.7e-128 463.4 363 61.2
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.3e-125 453.0 377 59.2
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 3.3e-124 449.1 387 55.6
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 3.6e-123 445.7 380 61.3
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 1.1e-122 444.1 253 78.7
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 6.8e-122 441.4 281 73.0
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 4.9e-120 435.3 387 54.3
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.4e-119 433.7 372 55.1
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 7.1e-119 431.4 381 54.6
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 2.5e-108 396.4 222 82.0
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.9e-104 382.9 306 63.1
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 8.7e-101 371.3 377 51.7
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 5.1e-93 345.5 310 57.1
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 7.4e-84 315.1 538 35.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 6.3e-83 312.0 271 62.0
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.8e-77 293.9 217 67.3
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 5.1e-77 292.4 210 70.5
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.7e-72 277.3 147 85.7
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 9.4e-71 271.6 144 86.1
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.9e-69 266.2 364 40.4
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 2.6e-65 253.4 220 60.0
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 8.5e-56 221.9 154 72.7
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.1e-55 221.5 134 75.4
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.5e-55 221.1 147 72.8
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 5.2e-45 186.0 109 76.1
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 9.8e-44 181.8 155 58.1
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 1.7e-40 171.0 290 34.5
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.0e-33 147.5 92 70.7
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.6e-30 137.9 285 30.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 3.5e-25 120.2 148 45.3
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 6.8e-21 105.9 66 71.2
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.2e-20 105.1 57 80.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 3.7e-19 100.1 59 76.3
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 5.0e-16 89.7 52 69.2
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 1.6e-14 84.7 78 52.6
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 4.0e-13 80.1 57 66.7
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 7.5e-12 75.9 48 72.9
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 1.5e-07 61.6 192 27.6
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 3.3e-07 60.5 188 28.2
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 9.5e-07 58.9 188 29.3
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 2.8e-06 57.4 168 29.2
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 2.8e-06 57.4 35 65.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 4.7e-06 56.6 187 26.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.2e-06 56.2 181 28.2
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 6.2e-06 56.2 151 28.5
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 6.2e-06 56.2 167 28.7
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 8.1e-06 55.8 186 26.3


User provided reference genes

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