Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 0.0e+00 2040.4 1054 100.0
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1962.6 1119 92.3
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1761.1 1123 83.0
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 0.0e+00 1402.5 1088 69.6
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1276.9 1118 60.8
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1230.3 1121 59.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1214.9 1116 56.5
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1196.8 1117 56.8
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1194.1 1122 55.3
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1189.5 1113 57.5
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1188.7 1125 55.6
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1179.5 1116 57.3
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1172.1 1113 54.1
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1153.7 1129 52.6
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1151.0 1116 53.9
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1145.2 1112 55.5
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1139.8 1120 53.7
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1133.6 1116 53.6
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1131.3 1112 55.8
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1129.4 1120 53.9
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1125.9 1119 52.5
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1122.8 1120 53.2
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1121.7 1115 52.9
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1116.3 1111 52.4
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1109.7 1325 48.7
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1108.6 1122 52.7
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1108.2 1331 46.5
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1106.7 1118 54.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1099.0 1122 52.8
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1090.1 1123 54.7
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1079.7 1121 51.0
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1078.2 1136 51.4
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1078.2 1151 50.1
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1075.8 1114 50.9
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 1.4e-311 1073.2 1119 53.1
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.9e-311 1072.0 1120 51.5
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 3.6e-311 1071.6 1120 51.5
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.5e-310 1068.9 1120 51.6
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 7.1e-310 1067.4 1115 50.9
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 7.9e-309 1063.9 1117 50.8
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 7.9e-309 1063.9 1110 50.9
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 1.0e-308 1063.5 1110 50.6
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 8.7e-308 1060.4 1076 53.1
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 1.5e-307 1059.7 1114 50.6
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 2.0e-304 1049.3 1115 49.8
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 1.1e-302 1043.5 1135 50.0
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 5.5e-302 1041.2 1113 49.7
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 1.2e-301 1040.0 1125 49.7
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 1.0e-300 1036.9 1112 49.7
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.9e-299 1032.7 1120 50.2
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 2.5e-299 1032.3 1122 50.6
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 3.7e-298 1028.5 1116 52.3
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 1.1e-297 1026.9 1125 49.9
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 2.4e-297 1025.8 1121 50.2
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 9.0e-297 1023.8 1115 49.4
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 4.5e-296 1021.5 1115 51.1
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-293 1013.4 1118 48.7
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 3.6e-293 1011.9 1147 48.6
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 6.1e-293 1011.1 1117 48.6
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 6.1e-293 1011.1 1154 47.9
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 1.0e-292 1010.4 1056 50.5
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 3.0e-292 1008.8 1110 49.5
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 4.3e-291 1005.0 1101 49.1
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 2.2e-290 1002.7 1119 49.1
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 3.7e-290 1001.9 1113 48.9
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 4.8e-290 1001.5 1111 48.3
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 1.1e-289 1000.3 1102 49.1
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 6.9e-289 997.7 1102 48.0
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 6.7e-284 981.1 1116 49.0
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 6.3e-282 974.5 1118 47.9
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 2.9e-279 965.7 1110 48.1
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.2e-277 960.3 751 67.1
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 5.2e-276 954.9 1108 46.7
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 6.7e-276 954.5 1110 47.6
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 8.8e-276 954.1 842 60.5
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 4.8e-274 948.3 1111 46.4
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 1.1e-270 937.2 1122 47.0
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 2.1e-269 932.9 994 50.9
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 8.0e-269 931.0 978 51.3
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 1.0e-268 930.6 1117 45.9
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 2.7e-264 916.0 1126 45.3
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 4.0e-260 902.1 1123 44.3
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 1.4e-252 877.1 712 69.1
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 1.7e-250 870.2 1115 44.3
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 6.3e-250 868.2 1125 44.2
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.8e-241 840.1 1109 44.5
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 3.2e-241 839.3 1123 42.0
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 4.6e-240 835.5 1065 46.1
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 3.3e-238 829.3 1114 42.1
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.3e-223 780.0 786 52.7
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 1.7e-202 710.7 1100 40.5
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.4e-164 583.9 427 73.5
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 5.0e-162 576.2 423 68.3
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 9.4e-161 572.0 1138 33.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.2e-152 545.0 657 46.4
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 5.9e-139 499.6 651 45.3
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 1.5e-129 468.4 528 47.9
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 5.4e-124 449.9 1124 31.2
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 5.4e-116 423.3 851 33.6
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.9e-114 417.2 1111 30.2
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.2e-101 374.8 522 40.6
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.3e-90 339.0 299 57.2
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 4.9e-85 320.5 216 69.4
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 1.3e-74 285.8 376 44.9
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 4.8e-72 277.3 183 70.5
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 4.1e-63 247.7 335 43.6
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 6.5e-61 240.4 204 59.8
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 5.7e-49 200.7 176 60.8
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-45 187.6 814 26.8
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 8.8e-42 176.8 365 31.8
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 5.0e-37 161.0 235 43.0
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 8.0e-27 127.1 194 35.6
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 3.0e-26 125.2 153 47.1
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 9.8e-25 120.2 506 25.7
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 3.3e-20 105.1 356 26.4
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 1.4e-15 89.7 107 46.7
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.2e-15 88.6 55 72.7
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 5.9e-14 84.3 53 71.7
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 5.9e-14 84.3 62 71.0
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.3e-13 82.4 271 25.1
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 6.8e-10 70.9 51 70.6
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.9e-07 62.8 46 58.7
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.1e-07 61.6 46 58.7
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-06 60.1 59 59.3
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.7e-06 58.9 57 57.9
HanXRQChr05g0142631 Helianthus annuus HOM05D001310 ORTHO05D023385 4.6e-06 58.2 136 29.4
CBR_g3721 Chara braunii HOM05D000115 ORTHO05D005317 7.8e-06 57.4 97 28.9


User provided reference genes

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