Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 0.0e+00 1273.8 705 100.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 0.0e+00 1192.6 705 94.8
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 0.0e+00 1180.6 705 93.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 0.0e+00 1132.1 705 90.1
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 0.0e+00 1117.4 701 87.2
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.8e-312 1074.3 701 86.2
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.1e-277 958.4 700 74.6
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.9e-211 738.8 704 61.9
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 7.1e-205 718.0 704 62.8
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 7.8e-204 714.5 704 61.5
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.3e-195 686.4 709 59.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 5.1e-195 685.3 705 60.7
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.7e-195 684.9 704 61.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 8.4e-190 667.9 706 60.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.3e-187 659.8 706 58.2
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 4.3e-186 655.6 706 58.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.4e-184 649.8 702 57.8
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.1e-184 649.4 765 47.6
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.0e-184 649.0 704 52.3
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 2.6e-183 646.4 703 58.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.7e-182 643.7 710 58.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 7.1e-181 638.3 704 58.1
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.0e-179 634.4 702 57.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 4.3e-178 629.0 707 57.3
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 3.7e-177 625.9 703 57.5
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.5e-175 620.5 711 57.2
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 3.4e-175 619.4 702 58.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 5.9e-175 618.6 704 58.4
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 7.9e-172 608.2 723 55.0
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 6.7e-171 605.1 702 56.4
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.9e-170 603.6 708 55.1
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.6e-169 600.5 703 55.8
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.7e-169 599.4 703 55.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-168 597.8 706 54.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.8e-168 597.0 705 54.8
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.8e-168 597.0 634 62.0
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.1e-168 596.3 703 55.5
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.1e-168 595.9 703 55.2
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 5.3e-168 595.5 705 49.4
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.6e-167 593.2 703 54.9
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.3e-166 590.9 707 55.7
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 5.0e-166 589.0 702 55.7
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 8.5e-166 588.2 703 54.9
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.4e-165 587.4 703 54.6
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.2e-164 584.3 705 54.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.2e-164 584.3 703 54.9
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 2.7e-164 583.2 633 59.2
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 3.0e-163 579.7 704 55.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 8.8e-163 578.2 706 55.0
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.1e-162 577.8 707 48.4
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.5e-162 577.4 723 53.8
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.4e-162 575.9 706 54.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.4e-162 575.1 729 52.3
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.2e-161 573.5 713 52.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 3.7e-161 572.8 705 48.8
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.8e-161 572.4 757 47.0
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 8.2e-161 571.6 703 55.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.1e-160 571.2 712 52.1
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.8e-160 570.5 673 56.6
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.1e-160 569.7 702 54.4
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 5.3e-160 568.9 705 52.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.0e-159 567.0 706 51.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 5.0e-158 562.4 707 51.8
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.1e-156 557.0 740 50.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 6.1e-156 555.4 706 53.1
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.4e-155 554.3 710 54.4
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 2.3e-155 553.5 708 54.1
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 3.9e-155 552.7 712 51.8
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.0e-154 550.4 709 52.5
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 9.7e-154 548.1 707 51.3
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.3e-153 547.7 703 52.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.6e-151 540.0 704 52.6
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 3.5e-151 539.7 736 51.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 9.4e-149 531.6 705 52.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-147 527.7 703 51.1
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 8.8e-147 525.0 648 56.5
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 2.8e-145 520.0 703 51.4
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.5e-143 513.1 741 48.3
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 3.8e-142 509.6 708 50.3
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.5e-142 508.4 703 50.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.9e-141 507.3 704 51.6
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 2.7e-140 503.4 704 51.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 8.8e-139 498.4 708 50.0
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 4.4e-138 496.1 708 49.4
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 7.5e-138 495.4 714 49.9
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 9.8e-138 495.0 707 49.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.7e-137 493.0 708 49.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 8.3e-137 491.9 705 49.8
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.8e-136 490.7 707 49.9
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.1e-136 490.0 707 49.1
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.6e-135 487.6 517 60.9
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 4.5e-135 486.1 633 53.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.9e-133 480.7 702 49.4
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.9e-133 480.7 704 48.6
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.5e-133 480.3 705 50.6
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.2e-133 479.9 704 48.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.4e-131 474.6 704 50.0
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-131 473.8 521 48.9
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 3.1e-128 463.4 706 49.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 6.6e-126 455.7 707 45.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 8.6e-126 455.3 703 40.3
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-124 449.1 518 56.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.7e-121 439.9 708 38.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-119 434.5 728 47.3
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.3e-118 431.4 707 39.2
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 7.3e-117 425.6 709 39.2
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.6e-116 423.3 710 38.6
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 4.7e-116 422.9 707 47.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.3e-115 420.6 532 45.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 6.0e-111 406.0 707 36.6
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 8.6e-110 402.1 478 59.4
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.3e-107 394.0 579 50.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.0e-106 391.0 727 40.0
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.1e-103 380.9 727 38.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.0e-102 377.1 632 48.7
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 2.4e-99 367.5 525 50.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.0e-90 337.8 534 42.7
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.5e-85 320.9 540 40.9
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 5.8e-82 309.7 731 43.1
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 6.7e-78 296.2 424 53.8
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.1e-77 295.4 312 52.6
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-77 293.9 480 38.1
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 3.1e-75 287.3 471 43.1
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-73 280.8 484 36.4
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 2.7e-71 274.2 362 44.2
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.9e-64 251.5 277 65.7
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.0e-63 246.5 431 38.7
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.7e-61 240.0 255 72.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.2e-57 228.0 273 48.4
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 6.5e-57 226.5 255 52.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 5.5e-48 196.8 212 53.3
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 3.4e-42 177.6 713 30.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 3.4e-42 177.6 123 70.7
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.0e-41 176.0 202 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.6e-39 167.5 572 26.9
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-37 162.5 123 66.7
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-35 155.2 160 56.2
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 7.2e-32 143.3 123 61.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 9.4e-32 142.9 209 44.5
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.3e-30 138.3 140 58.6
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 1.5e-29 135.6 514 27.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 2.0e-29 135.2 133 56.4
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.6e-29 134.8 123 55.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 2.2e-28 131.7 109 59.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.0e-26 125.2 146 45.2
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.5e-26 124.4 132 51.5
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 8.5e-25 119.8 124 47.6
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-24 117.5 96 63.5
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.2e-24 117.5 98 62.2
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 7.2e-24 116.7 123 48.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-23 115.9 111 56.8
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 7.5e-21 106.7 74 70.3
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.5e-18 97.4 71 64.8
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.8e-17 94.4 106 47.2
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.9e-16 92.0 106 47.2
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 1.9e-16 92.0 53 79.2
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.5e-16 91.7 162 37.7
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.5e-16 89.7 106 46.2
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.5e-16 89.7 106 46.2
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.4e-14 85.9 261 28.7
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-14 85.5 106 46.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.0e-13 82.0 282 27.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-13 81.3 65 64.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 5.7e-13 80.5 125 37.6
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-13 79.7 106 44.3
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-12 77.8 65 61.5
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 3.7e-12 77.8 259 26.6
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-12 77.4 65 63.1
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-12 77.4 65 63.1
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 106 42.5
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 95 46.3
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-12 77.0 65 61.5
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.3e-12 76.6 65 61.5
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.4e-11 73.9 45 66.7
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 8.6e-09 66.6 75 49.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.2e-07 62.8 135 37.8
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 4.7e-07 60.8 78 51.3
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.4e-06 59.3 28 89.3
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 4.0e-06 57.8 43 53.5
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 5.2e-06 57.4 56 55.4


User provided reference genes

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