Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1682.2 892 100.0
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1676.8 892 99.6
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1582.8 893 93.3
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1555.8 897 92.8
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1544.3 896 92.0
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1471.4 893 88.1
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1351.7 901 77.4
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1338.6 880 77.8
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1338.2 859 80.6
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1333.5 905 78.7
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1332.0 896 77.3
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1328.9 895 77.4
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1321.2 891 77.7
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1297.0 835 80.8
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1291.2 827 79.3
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1286.2 827 81.4
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1281.2 825 79.9
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1273.5 909 74.9
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1271.1 861 77.4
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1269.6 882 77.7
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1267.7 870 76.1
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1263.8 840 79.3
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1262.3 848 78.7
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1261.1 827 77.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1260.0 832 80.2
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1259.6 882 76.5
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1256.5 882 76.4
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1256.1 840 78.5
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 886 74.8
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 869 75.5
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1252.3 845 76.6
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1248.8 876 73.5
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1247.6 875 74.9
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1247.3 902 75.1
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1245.3 905 74.6
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1245.3 842 78.1
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1245.0 839 78.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1244.6 840 78.3
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1243.8 824 78.2
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 820 81.3
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 872 75.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1237.2 895 72.1
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1237.2 904 71.7
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1236.1 898 72.2
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1234.9 822 79.1
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1231.1 902 72.1
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1230.3 896 72.0
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1228.0 896 74.4
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1226.5 891 72.7
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1224.9 880 73.9
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1224.9 874 76.5
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1224.2 899 71.5
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1223.8 825 76.0
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1223.4 821 77.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 888 73.2
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1221.1 861 74.4
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1219.9 862 75.1
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 860 75.3
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1213.7 909 70.6
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1213.0 857 74.6
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 894 71.0
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1206.4 863 73.7
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1202.2 862 73.9
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1201.8 852 74.2
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1199.5 855 77.0
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1193.7 871 73.2
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1187.2 894 72.1
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1186.4 858 73.2
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1181.0 917 68.4
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1178.7 883 71.7
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1175.2 882 69.0
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1168.3 862 74.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1167.9 889 69.6
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1163.7 832 71.2
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1160.2 819 71.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1154.0 832 71.4
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1152.9 872 68.6
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1140.6 884 71.0
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1124.0 843 72.2
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1122.5 833 69.5
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1118.6 840 69.5
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1114.4 878 69.8
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 3.3e-308 1061.6 810 69.5
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 3.3e-308 1061.6 810 69.5
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 2.2e-283 979.2 866 62.7
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 2.2e-264 916.0 621 79.7
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 4.0e-253 878.6 884 55.2
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.2e-246 857.1 566 77.2
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.6e-246 856.7 559 78.9
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.2e-238 830.5 616 74.2
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 3.7e-235 818.9 475 83.6
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 9.5e-231 804.3 892 50.0
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 2.5e-223 779.6 822 51.8
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.0e-216 757.7 526 75.7
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.8e-204 715.3 508 77.4
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 4.2e-194 682.6 573 70.3
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.8e-192 677.2 485 72.4
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.5e-188 664.1 822 44.2
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.7e-187 660.6 823 45.6
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.3e-171 607.8 464 71.1
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.2e-158 562.0 418 71.5
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 4.1e-149 533.1 837 37.8
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 9.5e-138 495.4 358 76.8
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.9e-98 364.8 201 86.1
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 6.2e-97 359.8 209 84.7
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 9.0e-96 355.9 258 70.9
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 9.0e-96 355.9 227 77.5
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.1e-93 346.3 222 79.3
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.3e-91 342.0 300 68.7
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.1e-88 330.9 194 86.1
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.4e-87 327.4 241 72.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 3.4e-87 327.4 226 73.5
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.9e-86 323.6 230 73.5
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.1e-77 295.8 196 75.5
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.2e-53 214.5 129 80.6
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 9.7e-50 203.0 210 56.7
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.4e-48 199.1 124 79.8
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.4e-48 199.1 113 82.3
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.0e-47 195.3 144 66.7
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.5e-47 194.1 155 68.4
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.9e-47 193.7 111 82.9
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 7.7e-39 166.8 106 79.2
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 6.5e-38 163.7 98 84.7
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.5e-34 152.5 87 82.8
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.5e-31 141.0 167 50.3
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.5e-26 125.9 87 73.6
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.9e-21 109.0 82 70.7
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.0e-20 103.6 72 73.6
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.8e-19 102.4 69 71.0
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.3e-17 94.0 59 79.7
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 5.9e-15 87.4 55 76.4
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.8e-15 87.0 53 81.1
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.3e-14 86.3 72 61.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.3e-14 86.3 72 61.1
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.7e-14 85.9 60 70.0
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.6e-12 78.2 71 66.2
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 4.9e-09 67.8 49 75.5
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 1.1e-08 66.6 42 81.0
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 1.9e-08 65.9 306 23.9
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 1.9e-08 65.9 200 26.0
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 5.4e-08 64.3 226 24.3
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 2.3e-06 58.9 117 39.3
Zm00001eb328630 Zea mays HOM05D000001 ORTHO05D000003 2.3e-06 58.9 224 25.9
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.0e-06 57.8 162 27.2
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 6.6e-06 57.4 38 71.1


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