Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g050160.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 1.0e-161 573.5 341 100.0
Sopen04g020860 Solanum pennellii HOM05D000104 ORTHO05D006397 5.4e-126 454.9 285 95.4
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 4.5e-104 382.1 234 86.8
Peaxi162Scf00373g01416 Petunia axillaris HOM05D000104 ORTHO05D006397 6.9e-97 358.2 226 84.5
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 1.9e-94 350.1 212 86.3
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 6.3e-90 335.1 234 76.1
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 6.5e-87 325.1 234 72.6
MSTRG.27435 Avicennia marina HOM05D000104 ORTHO05D006397 4.2e-86 322.4 235 71.5
ECA238G2794 Erigeron canadensis HOM05D000104 ORTHO05D006397 3.6e-85 319.3 234 72.2
Lsat_1_v5_gn_2_15881 Lactuca sativa HOM05D000104 ORTHO05D006397 3.6e-85 319.3 233 71.2
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 6.1e-85 318.5 234 71.8
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 2.3e-84 316.6 234 70.9
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 2.3e-84 316.6 234 70.1
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 6.7e-84 315.1 234 71.4
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 1.5e-83 313.9 234 69.7
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 1.5e-83 313.9 234 69.2
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 4.3e-83 312.4 236 70.3
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 5.7e-83 312.0 234 70.5
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 5.7e-83 312.0 234 68.8
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 7.4e-83 311.6 232 71.1
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 1.6e-82 310.5 235 68.5
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 2.2e-82 310.1 234 70.1
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 2.2e-82 310.1 235 66.8
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 2.2e-82 310.1 234 70.1
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.8e-82 309.7 234 70.5
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.8e-82 309.7 234 70.5
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 3.7e-82 309.3 234 70.1
DCAR_028378 Daucus carota HOM05D000104 ORTHO05D006397 3.7e-82 309.3 234 70.1
Rhsim09G0133300 Rhododendron simsii HOM05D000104 ORTHO05D006397 3.7e-82 309.3 231 68.8
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 4.8e-82 308.9 236 71.6
Lj2A45G39 Lonicera japonica HOM05D000104 ORTHO05D006397 6.3e-82 308.5 230 70.9
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 6.3e-82 308.5 234 69.2
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 8.2e-82 308.1 234 70.1
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 8.2e-82 308.1 233 70.4
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 8.2e-82 308.1 234 70.1
Sabra13G0044700 Salix brachista HOM05D000104 ORTHO05D006397 1.1e-81 307.8 260 65.8
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 3.1e-81 306.2 234 70.9
SGA_v2.0_scaffold62G21465 Striga asiatica HOM05D000104 ORTHO05D006397 3.1e-81 306.2 219 71.2
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 4.1e-81 305.8 235 71.1
CANSAT54G2768 Cannabis sativa HOM05D000104 ORTHO05D006397 5.3e-81 305.4 235 68.9
Ca_10025_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006397 5.3e-81 305.4 234 68.8
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 6.9e-81 305.1 234 69.7
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 9.0e-81 304.7 234 68.8
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 1.2e-80 304.3 233 70.4
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 1.5e-80 303.9 234 68.8
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 2.6e-80 303.1 235 67.7
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 3.4e-80 302.8 235 69.8
vmacro10381 Vaccinium macrocarpon HOM05D000104 ORTHO05D006397 3.4e-80 302.8 231 68.0
TPR.G26620 Trifolium pratense HOM05D000104 ORTHO05D006397 1.7e-79 300.4 234 67.9
EL10Ac4g09754 Beta vulgaris HOM05D000104 ORTHO05D006397 2.2e-79 300.1 232 67.7
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 3.8e-79 299.3 234 69.2
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 5.0e-79 298.9 234 67.9
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 6.5e-79 298.5 234 67.1
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 1.1e-78 297.7 233 67.4
Nn1g02987 Nelumbo nucifera HOM05D000104 ORTHO05D006397 3.2e-78 296.2 234 66.7
Lj5g0000218 Lotus japonicus HOM05D000104 ORTHO05D006397 4.2e-78 295.8 234 67.1
Ah.02g118350 Amaranthus hybridus HOM05D000104 ORTHO05D006397 9.4e-78 294.7 234 67.1
CsaV3_2G009970 Cucumis sativus L. HOM05D000104 ORTHO05D006397 1.2e-77 294.3 234 67.9
VMungo0720G2029 Vigna mungo HOM05D000104 ORTHO05D006397 1.6e-77 293.9 234 67.9
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 3.6e-77 292.7 233 68.7
CAN.G29.15 Capsicum annuum HOM05D000104 ORTHO05D006397 4.6e-77 292.4 246 67.9
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 4.6e-77 292.4 234 68.4
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 6.1e-77 292.0 233 68.2
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 6.1e-77 292.0 233 68.7
Atru.chr2.1068 Acer truncatum HOM05D000104 ORTHO05D006397 7.9e-77 291.6 234 66.2
Medtr1g080420 Medicago truncatula HOM05D000104 ORTHO05D006397 7.9e-77 291.6 234 66.2
ClCG11G010390 Citrullus lanatus HOM05D000104 ORTHO05D006397 1.8e-76 290.4 234 66.7
Psat6g144360 Pisum sativum HOM05D000104 ORTHO05D006397 1.8e-76 290.4 249 64.3
AL1G19030 Arabidopsis lyrata HOM05D000104 ORTHO05D006397 2.3e-76 290.0 251 62.5
unitig_37.g12285 Utricularia gibba HOM05D000104 ORTHO05D006397 2.3e-76 290.0 226 66.8
Aa31sc449G60 Aethionema arabicum HOM05D000104 ORTHO05D006397 8.8e-76 288.1 234 64.1
AT1G08600 Arabidopsis thaliana HOM05D000104 ORTHO05D006397 3.3e-75 286.2 251 61.8
Ciclev10030509m.g Citrus clementina HOM05D000104 ORTHO05D006397 4.4e-75 285.8 235 66.8
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 1.3e-74 284.3 277 57.4
Thhalv10006555m.g Eutrema salsugineum HOM05D000104 ORTHO05D006397 1.3e-74 284.3 249 61.8
MELO3C008639.2 Cucumis melo HOM05D000104 ORTHO05D006397 6.3e-74 282.0 240 65.0
AUR62006982 Chenopodium quinoa HOM05D000104 ORTHO05D006397 1.1e-73 281.2 237 64.1
THA.LOC104805785 Tarenaya hassleriana HOM05D000104 ORTHO05D006397 4.1e-73 279.3 240 61.7
Sp1g07260 Schrenkiella parvula HOM05D000104 ORTHO05D006397 1.2e-72 277.7 257 59.1
BcaB07g34102 Brassica carinata HOM05D000104 ORTHO05D006397 1.5e-72 277.3 256 59.4
C05p06690 Brassica napus HOM05D000104 ORTHO05D006397 1.5e-72 277.3 256 59.4
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 2.6e-72 276.6 256 59.4
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 3.4e-72 276.2 256 59.4
CDE02G4509 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 3.4e-72 276.2 256 60.2
Haze_04401 Corylus avellana HOM05D000104 ORTHO05D006397 7.7e-72 275.0 205 70.7
BolC5t29429H Brassica oleracea HOM05D000104 ORTHO05D006397 1.3e-71 274.2 256 59.0
Sed0014493 Sechium edule HOM05D000104 ORTHO05D006397 1.3e-71 274.2 248 62.5
ATR0787G043 Amborella trichopoda HOM05D000104 ORTHO05D006397 5.0e-71 272.3 256 58.6
PSO764G0152 Papaver somniferum HOM05D000104 ORTHO05D006397 1.9e-70 270.4 241 63.9
Carub.0001s0796 Capsella rubella HOM05D000104 ORTHO05D006397 9.4e-70 268.1 247 59.1
CARHR008500 Cardamine hirsuta HOM05D000104 ORTHO05D006397 1.2e-69 267.7 234 60.7
Aqoxy5G00143 Aquilegia oxysepala HOM05D000104 ORTHO05D006397 1.6e-69 267.3 234 59.4
HPP92_015192 Vanilla planifolia HOM05D000104 ORTHO05D006397 3.9e-68 262.7 236 59.3
Hund07179 Selenicereus undatus HOM05D000104 ORTHO05D006397 6.7e-68 261.9 197 66.5
Migut.F01812 Erythranthe guttata HOM05D000104 ORTHO05D006397 1.1e-67 261.2 239 60.3
BolC8t52520H Brassica oleracea HOM05D000104 ORTHO05D006397 2.2e-66 256.9 234 57.3
C08p49920 Brassica napus HOM05D000104 ORTHO05D006397 1.4e-65 254.2 234 56.8
BraA09t41927Z Brassica rapa HOM05D000104 ORTHO05D006397 3.5e-64 249.6 234 56.4
A09p65830 Brassica napus HOM05D000104 ORTHO05D006397 1.5e-62 244.2 234 56.0
Os10g0457700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006397 1.9e-62 243.8 234 57.3
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 8.2e-58 228.4 172 67.4
SEGI_02699 Sequoiadendron giganteum HOM05D000104 ORTHO05D006397 1.1e-54 218.0 257 52.5
Actinidia38931 Actinidia chinensis HOM05D000104 ORTHO05D006397 4.0e-52 209.5 150 69.3
BcaC07g41936 Brassica carinata HOM05D000104 ORTHO05D006397 4.0e-52 209.5 193 56.5
Zm00001eb046650 Zea mays HOM05D000104 ORTHO05D006397 9.8e-51 204.9 234 50.4
SHI15632 Sapria himalayana HOM05D000104 ORTHO05D006397 3.7e-50 203.0 255 49.0
Cpa.g.sc51.11 Carica papaya HOM05D000104 ORTHO05D006397 5.9e-48 195.7 149 65.8
Mapoly0058s0081 Marchantia polymorpha HOM05D000104 ORTHO05D006397 1.2e-45 188.0 232 47.0
SMO115G0122 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 2.8e-45 186.8 237 47.3
CDE09G0961 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 5.2e-44 182.6 121 76.9
Pp3c14_22150 Physcomitrium patens HOM05D000104 ORTHO05D006397 1.8e-36 157.5 255 40.0
SMO340G0266 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 6.8e-36 155.6 230 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2543 Anthoceros agrestis HOM05D000104 ORTHO05D006397 9.2e-33 145.2 270 38.1
SMO240G0025 Selaginella moellendorffii HOM05D059233 ORTHO05D006397 7.8e-32 142.1 223 42.6
AagrBONN_evm.TU.Sc2ySwM_368.1355 Anthoceros agrestis HOM05D000104 ORTHO05D006397 8.0e-29 132.1 244 38.5
AagrBONN_evm.TU.Sc2ySwM_368.1354 Anthoceros agrestis HOM05D002647 ORTHO05D002935 2.6e-27 127.1 232 40.1
CBR_g50040 Chara braunii HOM05D000104 ORTHO05D006397 1.1e-25 121.7 223 38.1
SalBow4G2470 Salvia bowleyana HOM05D017717 ORTHO05D006397 2.8e-13 80.5 82 54.9
Lsat_1_v5_gn_2_50481 Lactuca sativa HOM05D000894 ORTHO05D002325 2.7e-08 63.9 69 53.6


User provided reference genes

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