Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 0.0e+00 1318.1 683 100.0
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 0.0e+00 1290.0 683 98.5
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 0.0e+00 1193.3 702 91.5
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 6.7e-301 1036.9 703 80.2
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.5e-292 1009.2 702 78.9
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 5.7e-292 1007.3 705 78.0
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 2.6e-273 945.3 862 64.8
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 3.1e-229 798.9 708 63.1
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 4.6e-225 785.0 709 62.6
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 3.8e-219 765.4 708 61.3
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.9e-218 763.1 711 61.3
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.9e-218 763.1 712 60.7
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.2e-217 760.4 712 59.3
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.9e-215 753.1 711 60.9
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.1e-213 747.3 708 60.5
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.9e-213 744.6 710 59.6
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 5.8e-212 741.5 713 59.5
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 1.3e-211 740.3 707 60.1
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.4e-211 738.0 710 59.4
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.5e-207 726.9 706 57.9
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.5e-207 726.1 706 58.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 1.6e-206 723.4 709 58.1
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.1e-205 720.7 712 58.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.4e-205 720.3 706 57.6
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.2e-204 717.2 706 57.2
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-204 717.2 706 57.4
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 1.2e-204 717.2 713 58.1
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.6e-204 716.1 697 59.5
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 3.4e-204 715.7 719 58.1
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.9e-204 714.1 706 57.4
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 1.4e-202 710.3 728 57.0
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 2.4e-202 709.5 709 56.8
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 2.5e-199 699.5 711 57.1
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 3.3e-199 699.1 710 56.5
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.6e-199 698.4 720 55.8
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.8e-198 695.3 698 56.6
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.8e-197 693.3 713 56.7
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.5e-196 690.3 707 56.6
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.4e-196 689.1 710 57.0
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 7.6e-196 688.0 693 56.6
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 9.9e-196 687.6 714 55.3
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 9.9e-196 687.6 712 56.6
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.3e-195 687.2 709 55.7
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 1.1e-194 684.1 727 55.7
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.2e-194 682.2 727 55.3
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 4.2e-194 682.2 726 53.4
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 9.3e-194 681.0 699 56.9
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 1.6e-193 680.2 713 56.2
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.6e-193 680.2 710 53.8
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.6e-193 680.2 702 56.4
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 2.1e-193 679.9 696 56.0
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.3e-192 677.2 708 55.1
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 3.0e-192 676.0 702 54.7
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 6.7e-192 674.9 711 54.7
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 8.7e-192 674.5 728 54.8
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 1.9e-191 673.3 714 56.6
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 3.3e-191 672.5 708 54.5
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 9.6e-191 671.0 716 55.4
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 9.6e-191 671.0 726 56.6
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.1e-190 669.8 702 54.7
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 3.1e-189 666.0 720 56.0
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.0e-189 665.6 711 55.4
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 4.0e-189 665.6 716 56.1
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 5.3e-189 665.2 707 57.4
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.8e-188 661.8 708 54.5
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.0e-187 661.0 713 55.7
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 1.3e-187 660.6 717 55.0
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 1.7e-187 660.2 710 55.6
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 4.2e-186 655.6 708 54.1
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 1.2e-185 654.1 720 53.9
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.8e-184 650.2 729 54.0
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 1.8e-184 650.2 714 54.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 2.3e-184 649.8 709 54.6
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.9e-184 649.0 711 55.0
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.9e-184 649.0 710 53.7
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 8.7e-184 647.9 734 53.0
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.1e-183 647.5 712 54.4
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 5.7e-183 645.2 713 54.7
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 9.7e-183 644.4 710 54.1
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 9.7e-183 644.4 725 54.8
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 2.8e-182 642.9 716 54.5
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.8e-182 642.9 727 55.3
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 1.1e-181 641.0 710 54.9
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 2.4e-181 639.8 707 53.5
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 4.1e-181 639.0 737 52.4
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 5.3e-181 638.6 705 53.3
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 6.9e-181 638.3 706 53.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.5e-180 637.1 711 53.6
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.6e-180 636.3 705 53.0
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.6e-180 636.3 705 53.0
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 3.4e-180 636.0 704 53.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.0e-179 634.4 704 53.6
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 1.3e-179 634.0 704 53.0
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 2.9e-179 632.9 705 52.9
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 3.8e-179 632.5 703 52.6
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 6.5e-179 631.7 705 53.8
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 6.5e-179 631.7 707 52.9
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.1e-178 630.9 708 55.1
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.4e-178 630.6 706 52.8
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.2e-178 629.0 717 52.7
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 9.3e-178 627.9 703 52.8
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 3.9e-176 622.5 712 52.2
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 8.7e-176 621.3 725 52.4
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 8.7e-176 621.3 712 51.8
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 5.9e-172 608.6 715 53.3
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.7e-171 607.1 712 51.8
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 6.5e-171 605.1 716 52.2
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 7.9e-169 598.2 688 53.6
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.8e-165 587.0 721 50.8
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 5.9e-164 582.0 701 51.8
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 7.2e-162 575.1 718 50.7
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 1.4e-160 570.9 730 50.4
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.2e-160 568.9 718 51.0
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 5.2e-160 568.9 717 51.0
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 5.2e-152 542.3 698 49.6
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.7e-151 538.9 721 48.0
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.6e-148 530.8 707 48.5
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.7e-148 530.0 715 48.7
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 2.2e-147 526.9 716 47.8
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.6e-145 520.8 638 49.5
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.1e-145 520.4 714 48.3
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 1.3e-139 501.1 687 47.0
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 2.1e-129 467.2 734 43.7
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 2.0e-127 460.7 548 52.2
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.9e-126 456.8 374 66.6
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.9e-126 456.8 374 66.6
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.4e-125 452.6 677 46.2
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.5e-122 443.7 381 65.4
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.4e-117 427.9 732 41.0
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-111 408.3 372 63.4
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.3e-110 404.8 588 43.5
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 4.9e-102 376.3 323 67.5
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 1.6e-97 361.3 319 65.5
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 4.6e-92 343.2 390 51.5
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 3.0e-91 340.5 744 36.3
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 3.6e-89 333.6 392 48.7
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.0e-88 330.1 729 36.8
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.5e-87 328.2 722 35.6
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 9.3e-85 318.9 765 34.2
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.3e-85 318.9 464 43.8
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 2.7e-76 290.8 389 46.3
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 7.7e-63 246.1 346 44.2
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.1e-61 242.3 387 45.2
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.2e-61 240.4 633 34.3
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.0e-59 235.7 348 42.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 3.7e-57 227.3 476 36.3
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 1.2e-52 212.2 339 40.7
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.8e-49 201.1 152 73.7
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 2.2e-46 191.4 441 33.3
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.3e-38 165.6 153 55.6
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 7.2e-37 159.8 261 41.4
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 8.0e-36 156.4 241 41.5
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.6e-31 142.1 390 30.0
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-28 132.5 150 55.3
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.7e-28 130.6 154 53.2
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 8.0e-28 129.8 69 94.2
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 1.4e-27 129.0 410 30.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.7e-25 122.1 69 87.0
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.3e-21 107.8 57 96.5
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 7.2e-21 106.7 79 69.6
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 3.6e-20 104.4 502 27.7
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 4.4e-18 97.4 160 39.4
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 4.9e-17 94.0 51 88.2
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 4.1e-16 90.9 51 86.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 7.8e-15 86.7 57 75.4
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 5.6e-13 80.5 97 41.2
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.4e-11 75.9 91 49.5
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-10 72.4 91 47.3
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 1.5e-10 72.4 186 29.6
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 4.9e-09 67.4 92 46.7
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 1.9e-08 65.5 368 21.5


User provided reference genes

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