Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 4.9e-159 565.5 582 100.0
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 9.9e-128 461.5 514 97.5
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 6.9e-113 412.1 289 85.1
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 9.6e-107 391.7 511 90.2
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 3.8e-87 326.6 257 68.9
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.1e-73 282.0 267 61.8
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.4e-72 276.9 261 63.2
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 3.9e-68 263.5 249 53.4
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 3.7e-66 256.9 253 62.8
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 8.2e-66 255.8 263 58.6
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 1.8e-65 254.6 251 62.2
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 2.4e-65 254.2 261 58.6
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 5.3e-65 253.1 263 57.8
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 5.3e-65 253.1 263 57.8
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 5.9e-64 249.6 256 59.4
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 3.6e-61 240.4 231 51.5
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.5e-59 235.0 257 59.5
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 7.5e-59 232.6 264 47.7
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 8.2e-58 229.2 235 60.0
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 8.2e-58 229.2 171 62.6
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 8.2e-58 229.2 251 59.0
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.7e-56 224.2 248 56.9
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 5.0e-55 219.9 161 64.0
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 2.7e-53 214.2 172 59.9
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 4.7e-53 213.4 172 60.5
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 6.1e-53 213.0 268 50.7
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.0e-52 212.2 249 53.4
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 1.0e-52 212.2 223 61.9
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.8e-52 211.5 225 48.4
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 1.2e-51 208.8 172 56.4
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 1.2e-51 208.8 166 60.2
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 1.3e-50 205.3 164 59.1
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 1.7e-50 204.9 159 61.6
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 2.8e-50 204.1 160 61.2
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 2.8e-50 204.1 159 61.0
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 2.8e-50 204.1 158 62.0
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 6.3e-50 203.0 163 59.5
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 8.3e-50 202.6 155 62.6
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 8.3e-50 202.6 171 58.5
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 1.2e-48 198.7 161 57.1
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 2.7e-48 197.6 157 60.5
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.5e-48 197.2 225 58.7
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.5e-48 197.2 567 70.9
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.0e-47 195.7 161 55.9
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.0e-47 195.7 161 55.9
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 2.3e-47 194.5 157 57.3
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 2.9e-47 194.1 158 58.9
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 2.9e-47 194.1 161 55.3
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 3.8e-47 193.7 171 52.0
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 6.5e-47 193.0 160 56.2
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 8.6e-47 192.6 161 54.0
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 5.5e-46 189.9 146 60.3
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 7.2e-46 189.5 157 56.1
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 7.2e-46 189.5 256 42.2
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 1.6e-45 188.3 153 60.1
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 2.8e-45 187.6 161 57.1
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 2.8e-45 187.6 158 55.1
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 2.8e-45 187.6 146 62.3
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 3.6e-45 187.2 161 54.0
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 3.6e-45 187.2 156 58.3
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 4.7e-45 186.8 161 53.4
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 8.0e-45 186.0 158 57.6
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.0e-44 185.7 156 57.7
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 1.8e-44 184.9 156 55.1
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 2.3e-44 184.5 256 49.6
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 3.0e-44 184.1 158 51.9
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.2e-43 182.2 148 60.1
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 1.2e-43 182.2 161 52.8
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 2.6e-43 181.0 174 50.6
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 3.4e-43 180.6 145 57.9
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 9.8e-43 179.1 168 53.0
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.7e-42 178.3 148 55.4
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 3.7e-42 177.2 162 48.8
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 3.7e-42 177.2 150 56.7
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.9e-42 176.8 159 49.7
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 8.3e-42 176.0 147 55.8
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 8.3e-42 176.0 159 49.7
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 1.8e-41 174.9 161 52.2
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 5.0e-39 166.8 188 47.3
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 8.6e-39 166.0 147 53.1
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 1.1e-38 165.6 154 52.6
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 3.3e-38 164.1 188 46.8
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 4.3e-38 163.7 233 41.6
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 5.6e-38 163.3 139 54.7
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 1.4e-36 158.7 160 48.1
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 6.0e-32 143.3 113 61.1
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.3e-31 142.1 123 52.8
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 1.9e-30 138.3 143 43.4
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 1.9e-30 138.3 149 40.3
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 6.8e-28 129.8 265 43.4
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.2e-27 129.0 118 50.0
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.1e-25 122.5 99 55.6
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 5.6e-22 110.2 127 44.1
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 4.9e-18 97.1 47 91.5
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-17 95.5 134 61.9
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 2.7e-16 91.3 81 46.9
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 5.1e-15 87.0 80 52.5
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 2.5e-14 84.7 80 50.0
Cc00_g34390 Coffea canephora HOM05D006106 ORTHO05D007662 7.3e-14 83.2 71 57.7
Cc11_g03820 Coffea canephora HOM05D006106 ORTHO05D015839 3.6e-13 80.9 70 58.6
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 8.1e-13 79.7 79 49.4
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 8.1e-13 79.7 41 85.4
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 3.4e-11 74.3 46 69.6
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 4.4e-11 73.9 46 69.6
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 1.7e-10 72.0 116 36.2
Rhsim09G0172900 Rhododendron simsii HOM05D006106 ORTHO05D007662 8.4e-10 69.7 125 32.0
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 1.1e-09 69.3 66 50.0
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.4e-09 68.9 46 60.9
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 2.4e-09 68.2 44 68.2
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 3.2e-09 67.8 46 60.9
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 7.8e-08 63.2 115 37.4
COL.COLO4_28305 Corchorus olitorius HOM05D006106 ORTHO05D034875 7.8e-08 63.2 67 46.3
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 2.3e-07 61.6 119 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 3.0e-07 61.2 102 27.5


User provided reference genes

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