Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g005180.4 Solanum lycopersicum HOM05D003438 ORTHO05D004235 8.0e-191 670.2 332 100.0
Nitab4.5_0000591g0090 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.0e-97 359.4 230 77.0
Nitab4.5_0000149g0210 Nicotiana tabacum HOM05D003438 ORTHO05D004235 2.6e-96 356.3 250 72.4
CAN.G822.4 Capsicum annuum HOM05D003438 ORTHO05D004235 7.5e-80 301.6 172 85.5
Peaxi162Scf00396g01322 Petunia axillaris HOM05D003438 ORTHO05D004235 2.0e-77 293.5 227 66.1
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 1.5e-56 224.2 217 56.2
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 5.8e-56 222.2 244 51.2
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 1.9e-54 217.2 181 61.3
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 3.2e-54 216.5 181 63.5
Hma1.2p1_0762F.1_g214430 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 3.2e-54 216.5 173 61.8
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 2.3e-52 210.3 174 57.5
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 2.5e-51 206.8 251 47.4
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 4.3e-51 206.1 228 49.6
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 9.5e-51 204.9 236 47.9
Actinidia30181 Actinidia chinensis HOM05D003438 ORTHO05D004235 1.6e-50 204.1 232 48.3
RcHm_v2.0_Chr4g0436931 Rosa chinensis HOM05D003438 ORTHO05D004235 1.6e-50 204.1 169 57.4
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.1e-49 201.4 171 55.6
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 1.4e-49 201.1 238 48.7
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 4.0e-49 199.5 186 53.8
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 4.4e-48 196.1 171 55.0
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 5.8e-48 195.7 171 55.0
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 3.7e-47 193.0 242 47.5
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 8.3e-47 191.8 208 51.0
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 1.9e-46 190.7 199 50.8
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 3.2e-46 189.9 165 57.0
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 4.1e-46 189.5 175 55.4
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 1.2e-45 188.0 239 44.8
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 1.6e-45 187.6 236 45.3
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 2.1e-45 187.2 208 50.0
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 4.6e-45 186.0 229 46.7
Cpa.g.sc570.4 Carica papaya HOM05D003438 ORTHO05D004235 6.0e-45 185.7 206 50.5
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 6.0e-45 185.7 184 52.7
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 1.7e-44 184.1 168 54.2
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 6.6e-44 182.2 242 42.6
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 8.6e-44 181.8 170 55.3
Gohir.A03G107450 Gossypium hirsutum HOM05D003438 ORTHO05D004235 4.3e-43 179.5 190 51.1
Gohir.D02G132532 Gossypium hirsutum HOM05D003438 ORTHO05D004235 4.3e-43 179.5 169 55.0
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 5.6e-43 179.1 212 45.3
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 7.3e-43 178.7 180 55.6
GSVIVG01010143001 Vitis vinifera HOM05D003438 ORTHO05D004235 1.6e-42 177.6 171 53.2
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 2.8e-42 176.8 220 45.9
Ah.12g061020 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.1e-41 174.9 168 51.8
Ah.12g061030 Amaranthus hybridus HOM05D003438 ORTHO05D004235 1.1e-41 174.9 168 51.8
Sabra10G0104000 Salix brachista HOM05D003438 ORTHO05D004235 1.1e-41 174.9 281 40.9
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 1.1e-41 174.9 219 46.6
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 8.9e-41 171.8 167 51.5
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 1.2e-40 171.4 247 40.1
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 2.6e-40 170.2 167 50.3
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 2.6e-40 170.2 161 49.7
Ca_22511_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 2.6e-40 170.2 230 41.3
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 5.8e-40 169.1 167 50.9
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 1.3e-39 167.9 167 54.5
Cfa008819 Carpinus fangiana HOM05D003438 ORTHO05D004235 4.9e-39 166.0 221 44.3
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 4.9e-39 166.0 235 43.0
QL03p047190 Quercus lobata HOM05D003438 ORTHO05D004235 1.4e-38 164.5 168 54.8
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 1.4e-38 164.5 189 47.1
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 3.2e-38 163.3 198 48.0
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 4.1e-38 162.9 165 52.7
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 4.1e-38 162.9 167 47.9
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 5.4e-38 162.5 186 45.7
CSS0008902 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 9.2e-38 161.8 190 46.8
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 9.2e-38 161.8 217 47.0
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 2.1e-37 160.6 165 52.1
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 3.5e-37 159.8 205 44.4
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 6.0e-37 159.1 226 45.6
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 6.0e-37 159.1 226 45.1
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 6.0e-37 159.1 166 50.6
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 5.1e-36 156.0 167 51.5
Carub.0002s1550 Capsella rubella HOM05D003438 ORTHO05D004235 1.9e-35 154.1 231 41.6
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 4.3e-35 152.9 227 41.9
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 3.6e-34 149.8 228 41.7
BcaC03g15011 Brassica carinata HOM05D003438 ORTHO05D004235 4.7e-34 149.4 175 48.6
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 1.8e-33 147.5 179 48.0
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 1.8e-33 147.5 179 48.0
Lalb_Chr16g0392031 Lupinus albus HOM05D003438 ORTHO05D004235 2.6e-32 143.7 112 58.0
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 4.4e-32 142.9 155 46.5
Eucgr.G02401 Eucalyptus grandis HOM05D003438 ORTHO05D004235 2.2e-31 140.6 118 58.5
Nn4g23587 Nelumbo nucifera HOM05D003438 ORTHO05D004235 2.2e-31 140.6 226 37.6
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 6.4e-31 139.0 207 40.1
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 3.2e-30 136.7 125 52.0
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 9.2e-30 135.2 171 46.2
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 2.1e-29 134.0 172 45.3
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 7.8e-29 132.1 172 44.8
AUR62003033 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.0e-28 131.7 104 55.8
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 1.1e-27 128.3 165 42.4
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 4.3e-27 126.3 167 41.3
Os02g0581400 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 4.6e-21 106.3 172 37.8
CDE02G4531 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 6.6e-20 102.4 195 34.9
HPP92_019428 Vanilla planifolia HOM05D003438 ORTHO05D004235 3.3e-19 100.1 134 40.3
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 1.4e-17 94.7 161 36.0
SEGI_10147 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 3.1e-17 93.6 172 32.6
SEGI_27806 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 3.1e-17 93.6 172 32.6
Glyma.01G000322 Glycine max HOM05D003438 ORTHO05D004235 9.0e-17 92.0 84 54.8
Glyma.15G277502 Glycine max HOM05D003438 ORTHO05D004235 1.3e-15 88.2 84 53.6
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 1.9e-14 84.3 198 29.3
Glyma.U045802 Glycine max HOM05D003438 ORTHO05D004235 4.8e-10 69.7 62 53.2
MD13G1054200 Malus domestica HOM05D003438 ORTHO05D022225 5.3e-09 66.2 55 61.8
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 3.4e-08 63.5 151 26.5
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 5.8e-08 62.8 179 28.5
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 8.4e-07 58.9 228 24.6
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 2.5e-06 57.4 180 23.3
Cpa.g.sc48.236 Carica papaya HOM05D003438 ORTHO05D022225 7.1e-06 55.8 50 56.0
Cpa.g.sc878.3 Carica papaya HOM05D003438 ORTHO05D022225 7.1e-06 55.8 50 56.0
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 7.1e-06 55.8 206 27.2


User provided reference genes

Program Settings