Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 2.0e-132 475.7 233 100.0
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.5e-114 415.6 212 96.2
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.6e-113 412.9 212 95.8
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 2.1e-105 386.0 212 88.7
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 6.8e-104 380.9 194 94.3
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 9.5e-98 360.5 208 84.6
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 8.0e-97 357.5 215 80.5
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 8.0e-97 357.5 232 78.4
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 1.0e-96 357.1 216 80.1
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 4.0e-96 355.1 236 75.8
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.6e-95 352.4 233 77.7
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 8.3e-94 347.4 216 80.1
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.1e-93 347.1 219 78.1
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 1.4e-93 346.7 215 79.1
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.4e-93 346.7 220 78.2
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 4.1e-93 345.1 219 76.3
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 7.0e-93 344.4 219 76.7
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 1.0e-91 340.5 223 75.8
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.3e-91 340.1 219 75.3
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 1.7e-91 339.7 219 75.3
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 3.9e-91 338.6 212 76.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 3.9e-91 338.6 234 70.5
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.9e-91 338.6 228 72.4
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 1.1e-90 337.0 203 79.8
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 1.1e-90 337.0 234 71.4
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 1.9e-90 336.3 219 75.3
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 2.5e-90 335.9 201 80.1
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.5e-90 335.9 216 75.9
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 2.5e-90 335.9 207 77.3
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 4.3e-90 335.1 215 75.8
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.2e-89 333.6 216 75.5
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.2e-89 333.6 219 75.3
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 2.1e-89 332.8 215 75.8
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 2.8e-89 332.4 199 80.4
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 6.2e-89 331.3 226 73.0
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 6.2e-89 331.3 222 73.9
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 8.1e-89 330.9 228 71.1
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.1e-88 330.5 194 80.4
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 1.8e-88 329.7 221 72.4
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.1e-88 328.9 218 73.9
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 4.0e-88 328.6 217 72.8
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 5.2e-88 328.2 213 74.6
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 5.2e-88 328.2 223 74.0
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 5.2e-88 328.2 223 73.5
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 8.9e-88 327.4 228 70.2
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 8.9e-88 327.4 216 74.5
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.5e-87 326.6 210 74.8
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.0e-87 326.2 232 70.7
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 3.4e-87 325.5 207 74.9
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 3.4e-87 325.5 214 76.2
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 9.8e-87 323.9 219 73.5
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 9.8e-87 323.9 219 73.5
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 9.8e-87 323.9 198 78.8
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.3e-86 323.6 217 72.4
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 2.2e-86 322.8 213 74.2
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.2e-86 322.8 211 73.9
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 2.2e-86 322.8 216 73.1
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.9e-86 322.4 226 70.8
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 3.7e-86 322.0 187 81.3
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 3.7e-86 322.0 213 74.2
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 4.9e-86 321.6 224 72.3
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 4.9e-86 321.6 199 77.4
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.4e-86 321.2 218 72.5
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 6.4e-86 321.2 207 77.8
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 8.3e-86 320.9 187 81.8
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 1.1e-85 320.5 243 67.5
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.9e-85 319.7 191 79.1
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.9e-85 319.7 214 73.4
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 2.4e-85 319.3 214 72.9
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 3.2e-85 318.9 212 73.6
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 4.1e-85 318.5 213 72.3
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 5.4e-85 318.2 224 70.1
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 9.2e-85 317.4 197 75.6
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 2.1e-84 316.2 217 71.9
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 4.6e-84 315.1 212 72.6
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.6e-83 311.2 177 84.7
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.1e-82 310.5 218 71.1
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 2.3e-80 302.8 221 69.2
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 2.3e-80 302.8 205 69.3
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 3.1e-80 302.4 203 74.9
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 4.0e-80 302.0 199 72.4
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.7e-78 296.6 205 68.3
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 2.2e-78 296.2 205 68.8
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 2.9e-78 295.8 203 69.5
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.9e-78 295.8 206 68.0
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 4.9e-78 295.0 207 70.0
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 4.9e-78 295.0 207 70.0
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 6.4e-78 294.7 189 73.5
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 3.2e-77 292.4 214 65.4
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.2e-76 290.4 207 68.1
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 2.1e-76 289.7 214 65.0
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 4.6e-76 288.5 205 68.8
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 1.5e-74 283.5 205 66.8
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 1.9e-74 283.1 205 65.9
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 2.5e-74 282.7 205 65.9
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 9.6e-74 280.8 205 65.9
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 4.7e-73 278.5 210 64.8
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 4.0e-72 275.4 215 63.3
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 6.9e-72 274.6 168 78.6
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 3.2e-69 265.8 162 79.0
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 9.3e-69 264.2 242 55.8
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.7e-68 262.7 172 74.4
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 3.5e-68 262.3 176 74.4
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.5e-68 262.3 171 74.9
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 5.3e-64 248.4 198 63.6
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 9.3e-61 237.7 183 62.8
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.8e-59 233.4 205 58.5
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.8e-56 223.4 190 58.4
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.5e-55 220.3 160 67.5
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 4.2e-53 212.2 136 79.4
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.8e-51 206.8 131 78.6
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 1.0e-43 181.0 138 68.1
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 2.2e-41 173.3 217 45.6
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 7.2e-37 158.3 103 75.7
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 2.6e-31 139.8 93 77.4
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 7.7e-31 138.3 89 75.3
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 1.3e-30 137.5 215 43.3
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 2.5e-29 133.3 80 77.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 5.5e-29 132.1 191 45.5
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 2.3e-27 126.7 80 73.8
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.6e-26 123.2 203 42.9
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.4e-24 117.5 90 62.2
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 3.4e-23 112.8 68 76.5
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.2e-19 99.0 58 82.8
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 8.2e-17 91.7 57 77.2
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 1.8e-16 90.5 202 35.6
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 7.0e-16 88.6 56 75.0
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 1.2e-15 87.8 130 36.9
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 1.4e-11 74.3 65 58.5
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.3e-11 73.6 60 60.0
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.7e-09 67.4 51 62.7
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.0e-06 58.2 106 36.8
Cfa023417 Carpinus fangiana HOM05D005962 ORTHO05D123568 1.7e-06 57.4 135 30.4
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 2.2e-06 57.0 93 36.6
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 2.2e-06 57.0 93 36.6


User provided reference genes

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