Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g118980.2 Solanum lycopersicum HOM05D000280 ORTHO05D004091 6.0e-67 257.3 124 100.0
PGSC0003DMG400005660 Solanum tuberosum HOM05D000280 ORTHO05D004091 5.5e-28 127.9 72 88.9
Sabra19G0075800 Salix brachista HOM05D000280 ORTHO05D004091 2.3e-18 95.9 58 82.8
Sabra19G0081000 Salix brachista HOM05D000280 ORTHO05D004091 2.3e-18 95.9 58 82.8
Migut.G00022 Erythranthe guttata HOM05D000280 ORTHO05D004091 5.2e-18 94.7 58 82.8
Oeu014373.1 Olea europaea HOM05D000280 ORTHO05D004091 6.8e-18 94.4 55 87.3
Ca_25307_v3 Cicer arietinum L. HOM05D000280 ORTHO05D004091 8.8e-18 94.0 58 82.8
ATR0019G060 Amborella trichopoda HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
CSS0004756 Camellia sinensis var. sinensis HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Cpa.g.sc3.424 Carica papaya HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Dinv15400 Davidia involucrata HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Dinv26365 Davidia involucrata HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
ECA233G2375 Erigeron canadensis HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
FvH4_5g17000 Fragaria vesca HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
FAN04G2055 Fragaria x ananassa HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
FAN08G0202 Fragaria x ananassa HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
FAN18G4332 Fragaria x ananassa HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
HanXRQChr12g0366401 Helianthus annuus HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Manes.06G008800 Manihot esculenta HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Oeu041169.1 Olea europaea HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Potri.013G093400 Populus trichocarpa HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
Sabra13G0080300 Salix brachista HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
TWI60G0475 Tripterygium wilfordii HOM05D000280 ORTHO05D004091 1.2e-17 93.6 58 82.8
CiPaw.16G090500 Carya illinoinensis HOM05D000280 ORTHO05D004091 1.5e-17 93.2 58 82.8
MD14G1233200 Malus domestica HOM05D000280 ORTHO05D004091 1.5e-17 93.2 58 82.8
QL10p027384 Quercus lobata HOM05D000280 ORTHO05D004091 1.5e-17 93.2 58 82.8
AL1G30430 Arabidopsis lyrata HOM05D000280 ORTHO05D004091 2.0e-17 92.8 58 81.0
AT1G18070 Arabidopsis thaliana HOM05D000280 ORTHO05D004091 2.0e-17 92.8 58 81.0
CARHR018650 Cardamine hirsuta HOM05D000280 ORTHO05D004091 2.0e-17 92.8 58 81.0
Actinidia37887 Actinidia chinensis HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
BcaB07g31832 Brassica carinata HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
BcaC05g25700 Brassica carinata HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
BcaC07g41346 Brassica carinata HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
A06p14120 Brassica napus HOM05D000013 ORTHO05D004091 2.6e-17 92.4 58 81.0
A09p60110 Brassica napus HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
C05p16390 Brassica napus HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
C08p43550 Brassica napus HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
BolC5t30336H Brassica oleracea HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
BolC8t51901H Brassica oleracea HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
BraA06t24542Z Brassica rapa HOM05D000013 ORTHO05D004091 2.6e-17 92.4 58 81.0
BraA09t41380Z Brassica rapa HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
CANSAT80G0534 Cannabis sativa HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
CAN.G1129.35 Capsicum annuum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
CAN.G423.19 Capsicum annuum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Ca_17221_v3 Cicer arietinum L. HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Eucgr.B00852 Eucalyptus grandis HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Glyma.05G243400 Glycine max HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Glyma.08G051200 Glycine max HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Gohir.A11G004200 Gossypium hirsutum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Gohir.D11G003700 Gossypium hirsutum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Gorai.007G004700 Gossypium raimondii HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Lsat_1_v5_gn_2_20221 Lactuca sativa HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Manes.14G168200 Manihot esculenta HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Medtr8g106700 Medicago truncatula HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Nitab4.5_0006584g0010 Nicotiana tabacum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Nitab4.5_0009501g0020 Nicotiana tabacum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Peaxi162Scf00683g00027 Petunia axillaris HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Phvul.002G327100 Phaseolus vulgaris HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Psat1g033800 Pisum sativum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Psat7g004080 Pisum sativum HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
SalBow1G7158 Salvia bowleyana HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Sp1g16090 Schrenkiella parvula HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
SGA_v2.0_scaffold157G37360 Striga asiatica HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
TPR.G12926 Trifolium pratense HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
TPR.G21229 Trifolium pratense HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
TAR376G0815 Trochodendron aralioides HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
vmacro16427 Vaccinium macrocarpon HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
VMungo0251G3634 Vigna mungo HOM05D000280 ORTHO05D004091 2.6e-17 92.4 58 81.0
Atru.chr9.943 Acer truncatum HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 82.8
Haze_18789 Corylus avellana HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 81.0
HanXRQChr17g0552391 Helianthus annuus HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 81.0
Hma1.2p1_1257F.1_g270840 Hydrangea macrophylla HOM05D000280 ORTHO05D004091 3.4e-17 92.0 52 88.5
Potri.019G062500 Populus trichocarpa HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 81.0
Prupe.5G229200 Prunus persica HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 81.0
Solyc06g069020.4 Solanum lycopersicum HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 79.3
Sopen06g026310 Solanum pennellii HOM05D000280 ORTHO05D004091 3.4e-17 92.0 58 79.3
Carub.0001s1774 Capsella rubella HOM05D000280 ORTHO05D004091 4.4e-17 91.7 58 79.3
Lalb_Chr05g0221891 Lupinus albus HOM05D000280 ORTHO05D004091 4.4e-17 91.7 58 79.3
arahy.Tifrunner.gnm1.ann1.EBY6Y5 Arachis hypogaea HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
arahy.Tifrunner.gnm1.ann1.K2X0H0 Arachis hypogaea HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
BcaB07g31834 Brassica carinata HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
Lj4g0000794 Lotus japonicus HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
MD06G1224200 Malus domestica HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
Nn1g08543 Nelumbo nucifera HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
PSO017G0192 Papaver somniferum HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 81.0
PSO170G0215 Papaver somniferum HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 81.0
PGR044G1629 Punica granatum HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
Rhsim05G0101300 Rhododendron simsii HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
Rhsim06G0060300 Rhododendron simsii HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
Sc06g0005880 Simmondsia chinensis HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
THA.LOC104812160 Tarenaya hassleriana HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
unitig_46.g18702 Utricularia gibba HOM05D000280 ORTHO05D004091 5.7e-17 91.3 71 69.0
vmacro06077 Vaccinium macrocarpon HOM05D000280 ORTHO05D004091 5.7e-17 91.3 58 79.3
Aqoxy3G02712 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 79.3
arahy.Tifrunner.gnm1.ann1.WFT48X Arachis hypogaea HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 79.3
arahy.Tifrunner.gnm1.ann1.Z4P8EM Arachis hypogaea HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 79.3
BolC2t07103H Brassica oleracea HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 79.3
CDE05G1703 Ceratophyllum demersum HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 81.0
Cc04_g06660 Coffea canephora HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 79.3
THA.LOC104813913 Tarenaya hassleriana HOM05D000280 ORTHO05D004091 7.5e-17 90.9 58 79.3
Eucgr.K02259 Eucalyptus grandis HOM05D000280 ORTHO05D004091 9.8e-17 90.5 67 71.6
PGR083G2432 Punica granatum HOM05D000280 ORTHO05D004091 9.8e-17 90.5 58 79.3
unitig_32.g11845 Utricularia gibba HOM05D000280 ORTHO05D004091 9.8e-17 90.5 58 77.6
Actinidia35108 Actinidia chinensis HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 81.0
A08p30570 Brassica napus HOM05D000280 ORTHO05D004091 1.3e-16 90.1 67 67.2
MELO3C002118.2 Cucumis melo HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 79.3
Gohir.A09G174400 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 81.0
Gohir.D09G171300 Gossypium hirsutum HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 81.0
Gorai.006G193100 Gossypium raimondii HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 81.0
Lalb_Chr09g0330591 Lupinus albus HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 77.6
Lalb_Chr16g0387211 Lupinus albus HOM05D000280 ORTHO05D004091 1.3e-16 90.1 58 77.6
SHI19014 Sapria himalayana HOM05D000280 ORTHO05D004091 1.3e-16 90.1 54 83.3
Aa31LG4G4010 Aethionema arabicum HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 77.6
Aqoxy6G00143 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 77.6
MSTRG.10176 Avicennia marina HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 79.3
C08p18340 Brassica napus HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 77.6
BolC8t49468H Brassica oleracea HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 77.6
Thhalv10007335m.g Eutrema salsugineum HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 79.3
RcHm_v2.0_Chr7g0178871 Rosa chinensis HOM05D000280 ORTHO05D004091 1.7e-16 89.7 58 81.0
BcaC03g13837 Brassica carinata HOM05D000280 ORTHO05D004091 2.2e-16 89.4 58 77.6
Medtr6g080420 Medicago truncatula HOM05D000280 ORTHO05D004091 2.2e-16 89.4 58 77.6
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 2.8e-16 89.0 58 77.6
Lj2A266G59 Lonicera japonica HOM05D000280 ORTHO05D004091 2.8e-16 89.0 58 79.3
Rhsim12G0140200 Rhododendron simsii HOM05D000280 ORTHO05D004091 2.8e-16 89.0 58 79.3
Thecc.03G049400 Theobroma cacao HOM05D000280 ORTHO05D004091 2.8e-16 89.0 58 79.3
BcaC07g38908 Brassica carinata HOM05D000280 ORTHO05D004091 3.7e-16 88.6 58 75.9
CsaV3_1G007000 Cucumis sativus L. HOM05D000280 ORTHO05D004091 3.7e-16 88.6 58 77.6
Sed0018744 Sechium edule HOM05D000280 ORTHO05D004091 3.7e-16 88.6 58 77.6
HPP92_016191 Vanilla planifolia HOM05D000280 ORTHO05D004091 3.7e-16 88.6 52 82.7
EL10Ac2g04880 Beta vulgaris HOM05D000280 ORTHO05D004091 4.8e-16 88.2 58 77.6
EL10Ac8g20225 Beta vulgaris HOM05D000280 ORTHO05D004091 4.8e-16 88.2 58 77.6
Ah.05g170430 Amaranthus hybridus HOM05D000280 ORTHO05D004091 6.3e-16 87.8 58 77.6
Sc04g0002400 Simmondsia chinensis HOM05D000280 ORTHO05D004091 6.3e-16 87.8 58 74.1
Sc04g0003190 Simmondsia chinensis HOM05D000280 ORTHO05D004091 6.3e-16 87.8 58 74.1
Aqoxy5G04055 Aquilegia oxysepala HOM05D000280 ORTHO05D004091 8.3e-16 87.4 58 74.1
AUR62038540 Chenopodium quinoa HOM05D000280 ORTHO05D004091 8.3e-16 87.4 58 75.9
Sed0003870 Sechium edule HOM05D000280 ORTHO05D004091 8.3e-16 87.4 58 75.9
Thecc.03G049500 Theobroma cacao HOM05D000280 ORTHO05D004091 8.3e-16 87.4 58 77.6
DCAR_015168 Daucus carota HOM05D000280 ORTHO05D004091 1.1e-15 87.0 58 75.9
Zm00001eb086880 Zea mays HOM05D000280 ORTHO05D004091 1.1e-15 87.0 58 74.1
Zm00001eb420170 Zea mays HOM05D000280 ORTHO05D004091 1.1e-15 87.0 58 74.1
ClCG04G010790 Citrullus lanatus HOM05D000280 ORTHO05D004091 1.4e-15 86.7 58 77.6
DCAR_011380 Daucus carota HOM05D000280 ORTHO05D004091 1.4e-15 86.7 58 75.9
Pp3c27_2160 Physcomitrium patens HOM05D000280 ORTHO05D004091 1.4e-15 86.7 58 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1616 Anthoceros agrestis HOM05D000280 ORTHO05D004091 1.8e-15 86.3 58 72.4
Carub.0001s1984 Capsella rubella HOM05D000280 ORTHO05D004091 1.8e-15 86.3 58 74.1
AUR62013389 Chenopodium quinoa HOM05D000280 ORTHO05D004091 1.8e-15 86.3 58 74.1
Duzib084G0982 Durio zibethinus HOM05D000280 ORTHO05D004091 1.8e-15 86.3 58 77.6
Os04g0270100 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D004091 1.8e-15 86.3 58 72.4
SMO239G0009 Selaginella moellendorffii HOM05D000280 ORTHO05D004091 1.8e-15 86.3 58 74.1
Ciclev10008034m.g Citrus clementina HOM05D000280 ORTHO05D004091 3.1e-15 85.5 58 75.9
CBR_g45510 Chara braunii HOM05D000280 ORTHO05D004091 4.1e-15 85.1 58 72.4
MCO03G493 Micromonas commoda HOM05D000280 ORTHO05D004091 5.4e-15 84.7 58 70.7
Os02g0456500 Oryza sativa ssp. japonica HOM05D000280 ORTHO05D004091 5.4e-15 84.7 58 74.1
SEGI_30585 Sequoiadendron giganteum HOM05D000280 ORTHO05D004091 7.0e-15 84.3 67 65.7
PSO210G3797 Papaver somniferum HOM05D000280 ORTHO05D004091 1.2e-14 83.6 58 72.4
Hund00112 Selenicereus undatus HOM05D000280 ORTHO05D004091 1.2e-14 83.6 58 70.7
CBR_g45513 Chara braunii HOM05D000280 ORTHO05D004091 2.0e-14 82.8 58 69.0
Mapoly0103s0007 Marchantia polymorpha HOM05D000280 ORTHO05D004091 2.7e-14 82.4 58 72.4
Cfa025376 Carpinus fangiana HOM05D000280 ORTHO05D004091 7.7e-14 80.9 52 75.0
Haze_27073 Corylus avellana HOM05D000280 ORTHO05D004091 1.3e-13 80.1 87 51.7
ECA238G4744 Erigeron canadensis HOM05D000280 ORTHO05D004091 5.0e-13 78.2 58 67.2
Cre06.g284750 Chlamydomonas reinhardtii HOM05D000280 ORTHO05D004091 7.2e-12 74.3 67 59.7
PRCOL_00006751 Prasinoderma coloniale HOM05D000280 ORTHO05D004091 7.2e-12 74.3 58 69.0
Peaxi162Scf00332g00031 Petunia axillaris HOM05D000280 ORTHO05D004091 6.8e-10 67.8 37 86.5
arahy.Tifrunner.gnm1.ann1.L04U7Y Arachis hypogaea HOM05D000280 ORTHO05D004091 1.2e-09 67.0 55 65.5
Thhalv10027757m.g Eutrema salsugineum HOM05D000280 ORTHO05D004091 1.5e-09 66.6 64 54.7
COL.COLO4_05856 Corchorus olitorius HOM05D000280 ORTHO05D004091 4.1e-07 58.5 39 76.9
CARHR180060 Cardamine hirsuta HOM05D000280 ORTHO05D004091 2.7e-06 55.8 34 76.5
Haze_26875 Corylus avellana HOM05D000280 ORTHO05D006100 4.5e-06 55.1 58 50.0


User provided reference genes

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