Gene: Solyc06g069020.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc06g069020.4
- Transcript Identifier Solyc06g069020.4.1
- Gene Type Coding gene
- Location SL4.0ch06 : 40458027-40468148 : positive
Gene Family Information
- ID HOM05D000280
- #Genes/#Species 1564/100
- Phylogenetic origin
- ID ORTHO05D004091
- #Genes/#Species 192/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc06g069020.4.1
- uniprot A0A3Q7H0E4
- gene_id Solyc06g069020
Descriptions
- Description Elongation factor (AHRD V3.3 *** A0A200PY18_9MAGN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000288 | IEA | InterPro | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | |
| GO:0006415 | IEA | InterPro | translational termination | |
| GO:0006412 | IBA IEA | GOA Database | translation | |
| GO:0002184 | IBA | GOA Database | cytoplasmic translational termination | |
| GO:0006414 | ISO | PLAZA Homology (enrichment) | translational elongation | HOM05D000280 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003924 | IBA | GOA Database | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005525 | IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003747 | IBA | GOA Database | translation release factor activity | |
| GO:0003747 | IEA | InterPro | translation release factor activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0003746 | ISO | PLAZA Homology (enrichment) | translation elongation factor activity | HOM05D000280 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0018444 | IBA | GOA Database | translation release factor complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000795 | Translational (tr)-type GTP-binding domain |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR004161 | Translation elongation factor EFTu-like, domain 2 |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR003285 | Eukaryotic peptide chain release factor GTP-binding subunit |
| Mapman id | Description |
|---|---|
| 17.3.2.1.2 | Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.eRF1-eRF3 aberrant mRNA detection complex.GTPase component eRF3 |