Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 0.0e+00 2192.2 1083 100.0
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 0.0e+00 1911.7 1070 88.4
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 0.0e+00 1751.5 1073 81.2
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 0.0e+00 1719.9 919 93.3
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 0.0e+00 1334.7 904 75.3
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 0.0e+00 1277.7 839 77.2
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.5e-311 1073.2 1114 53.2
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.0e-307 1059.3 1082 52.1
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 2.9e-306 1055.4 1093 52.0
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 4.9e-306 1054.7 1094 52.7
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 8.4e-290 1000.7 1095 50.3
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 7.4e-286 987.6 968 54.5
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 2.6e-283 979.2 1077 49.1
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 2.1e-280 969.5 1095 49.8
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 1.0e-279 967.2 1113 49.1
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 6.3e-277 958.0 603 80.4
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.4e-273 946.8 1152 47.0
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 1.6e-272 943.3 1077 47.9
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.1e-272 943.0 1099 48.3
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 1.1e-270 937.2 1137 46.4
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 1.1e-270 937.2 1089 48.8
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 4.3e-270 935.3 1078 48.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.8e-269 932.6 1134 46.6
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 1.1e-268 930.6 1040 48.3
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 6.9e-268 927.9 1135 46.8
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 1.2e-264 917.1 1023 50.0
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.6e-264 916.8 1082 48.2
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.3e-263 912.9 1108 46.8
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.8e-260 903.3 1045 47.9
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 3.1e-260 902.5 1140 44.7
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 6.9e-260 901.4 1135 45.0
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 6.9e-260 901.4 1151 45.4
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 1.5e-259 900.2 1134 45.3
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 1.0e-258 897.5 1109 46.5
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 3.8e-258 895.6 1138 45.1
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.8e-255 886.7 1046 48.7
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 2.4e-252 876.3 1048 49.2
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 8.0e-248 861.3 1055 45.7
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.8e-247 860.1 1103 45.1
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 2.8e-245 852.8 1067 45.5
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 8.2e-245 851.3 1074 45.1
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 7.0e-244 848.2 930 50.1
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 1.6e-243 847.0 1053 45.1
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 2.5e-241 839.7 1060 46.5
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 3.2e-241 839.3 1030 46.9
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 5.5e-241 838.6 1129 43.7
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 9.4e-241 837.8 1128 42.7
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.6e-240 835.9 1090 44.9
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 7.5e-238 828.2 1056 45.3
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 9.8e-238 827.8 1146 42.4
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 2.8e-237 826.2 1055 45.1
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 3.7e-237 825.9 1057 44.8
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 3.1e-236 822.8 672 61.5
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 5.4e-236 822.0 1022 47.2
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 7.0e-236 821.6 1057 44.7
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 1.7e-234 817.0 1111 44.2
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 2.2e-234 816.6 1090 44.5
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 8.5e-234 814.7 1094 44.5
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 8.5e-234 814.7 1080 44.4
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 5.5e-233 812.0 1088 44.0
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 1.2e-232 810.8 1090 43.3
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 1.2e-232 810.8 1079 43.7
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 1.0e-231 807.7 1091 42.9
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 6.8e-231 805.1 1099 42.9
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 2.0e-230 803.5 1083 43.7
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.4e-228 797.3 1086 43.5
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 5.9e-227 792.0 1104 42.7
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 5.6e-225 785.4 1089 42.6
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 4.4e-222 775.8 682 57.9
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 1.7e-221 773.9 1048 43.3
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 1.6e-219 767.3 672 58.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.0e-218 764.6 713 57.1
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 6.6e-218 761.9 675 59.1
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 2.5e-217 760.0 847 49.7
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 3.9e-210 736.1 1042 40.0
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 5.0e-210 735.7 1028 43.4
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 4.7e-208 729.2 1058 41.5
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.5e-198 697.6 916 44.4
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 3.2e-196 689.9 686 51.3
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 4.6e-195 686.0 677 51.4
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 6.0e-195 685.6 993 41.9
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.9e-189 666.8 681 53.3
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 6.7e-178 629.0 1028 39.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 7.1e-164 582.4 1013 36.4
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 2.1e-163 580.9 849 40.9
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 2.2e-144 517.7 667 43.2
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 2.6e-137 494.2 527 51.0
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 8.0e-123 446.0 763 35.6
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 4.5e-110 403.7 363 58.4
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 2.9e-109 401.0 537 44.7
COL.COLO4_37288 Corchorus olitorius HOM05D007034 ORTHO05D008665 1.0e-101 375.9 760 35.0
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 5.6e-92 343.6 818 33.5
Cpa.g.sc13.203 Carica papaya HOM05D007034 ORTHO05D008665 3.8e-64 251.1 658 29.5
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 6.4e-56 223.8 506 32.2
Peaxi162Scf00314g00824 Petunia axillaris HOM05D007034 ORTHO05D008665 2.5e-47 195.3 94 95.7
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.0e-45 188.3 178 59.0
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.1e-42 179.9 184 56.5
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 1.4e-42 179.5 164 61.6
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 5.0e-40 171.0 164 58.5
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 8.5e-40 170.2 163 57.7
SEGI_36690 Sequoiadendron giganteum HOM05D007034 ORTHO05D008665 3.6e-38 164.9 129 55.0
Cpa.g.c43582 Carica papaya HOM05D007034 ORTHO05D008665 6.3e-35 154.1 135 57.0
Glyma.17G184700 Glycine max HOM05D007034 ORTHO05D006448 3.7e-27 128.3 74 70.3
TAR622G0405 Trochodendron aralioides HOM05D001184 ORTHO05D007940 1.2e-25 123.2 408 27.7
TAR622G0913 Trochodendron aralioides HOM05D007034 ORTHO05D008665 3.5e-25 121.7 327 29.1
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 4.4e-20 104.8 70 70.0
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 9.7e-20 103.6 70 68.6
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.2e-17 96.7 72 66.7
CSS0014219 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 7.7e-17 94.0 107 42.1
HanXRQChr10g0301151 Helianthus annuus HOM05D007034 ORTHO05D008665 8.5e-16 90.5 45 84.4
Atru.chr6.1955 Acer truncatum HOM05D007034 ORTHO05D008665 5.2e-13 81.3 138 35.5
Zm00001eb094900 Zea mays HOM05D000085 ORTHO05D014542 6.8e-13 80.9 70 51.4
Lsat_1_v5_gn_2_45281 Lactuca sativa HOM05D007034 ORTHO05D008665 1.5e-12 79.7 62 58.1
MBI11_g13135_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.4e-10 72.4 169 28.4
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 7.0e-10 70.9 60 63.3
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 2.9e-08 65.5 182 31.9
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 4.7e-06 58.2 124 29.0


User provided reference genes

Program Settings