Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g111750.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 1.7e-28 128.6 64 100.0
Sopen03g030860 Solanum pennellii HOM05D000464 ORTHO05D006292 2.9e-12 74.7 38 86.8
Solyc03g111740.3 Solanum lycopersicum HOM05D000464 ORTHO05D006292 3.7e-12 74.3 38 84.2
PGSC0003DMG402015159 Solanum tuberosum HOM05D000464 ORTHO05D006292 3.7e-12 74.3 40 85.0
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 7.0e-11 70.1 38 78.9
Nitab4.5_0000510g0020 Nicotiana tabacum HOM05D000464 ORTHO05D006292 9.2e-11 69.7 37 83.8
Peaxi162Scf00089g01023 Petunia axillaris HOM05D000464 ORTHO05D006292 9.2e-11 69.7 37 83.8
CAN.G472.58 Capsicum annuum HOM05D000464 ORTHO05D006292 2.7e-10 68.2 37 78.4
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.7e-10 68.2 38 73.7
Nitab4.5_0001812g0090 Nicotiana tabacum HOM05D000464 ORTHO05D006292 2.7e-10 68.2 37 81.1
Ciclev10019772m.g Citrus clementina HOM05D000464 ORTHO05D006292 6.0e-10 67.0 36 72.2
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 7.8e-10 66.6 38 73.7
Ca_16109_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 7.8e-10 66.6 38 65.8
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 1.0e-09 66.2 38 73.7
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 1.0e-09 66.2 38 65.8
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 1.3e-09 65.9 38 71.1
Actinidia19369 Actinidia chinensis HOM05D000464 ORTHO05D006292 1.7e-09 65.5 40 70.0
Lalb_Chr12g0202001 Lupinus albus HOM05D000464 ORTHO05D006292 1.7e-09 65.5 38 68.4
Phvul.003G207100 Phaseolus vulgaris HOM05D000464 ORTHO05D006292 1.7e-09 65.5 38 65.8
TAR371G0383 Trochodendron aralioides HOM05D000464 ORTHO05D006292 1.7e-09 65.5 36 75.0
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 2.3e-09 65.1 38 65.8
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 2.3e-09 65.1 38 71.1
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 2.3e-09 65.1 37 75.7
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 2.3e-09 65.1 38 65.8
Atru.chr9.967 Acer truncatum HOM05D000464 ORTHO05D000408 3.0e-09 64.7 36 72.2
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 3.0e-09 64.7 38 63.2
GSVIVG01007587001 Vitis vinifera HOM05D000464 ORTHO05D006292 3.0e-09 64.7 40 72.5
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 3.9e-09 64.3 38 65.8
Rhsim12G0170400 Rhododendron simsii HOM05D000464 ORTHO05D006292 3.9e-09 64.3 36 77.8
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 5.0e-09 63.9 38 71.1
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 5.0e-09 63.9 36 75.0
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 5.0e-09 63.9 38 63.2
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 6.6e-09 63.5 36 69.4
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 6.6e-09 63.5 38 63.2
Hma1.2p1_0046F.1_g027400 Hydrangea macrophylla HOM05D000464 ORTHO05D006292 6.6e-09 63.5 38 68.4
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 6.6e-09 63.5 37 67.6
RcHm_v2.0_Chr7g0191771 Rosa chinensis HOM05D000464 ORTHO05D006292 6.6e-09 63.5 38 68.4
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 8.6e-09 63.2 38 68.4
Cfa009511 Carpinus fangiana HOM05D000464 ORTHO05D000408 8.6e-09 63.2 38 68.4
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 8.6e-09 63.2 38 68.4
Eucgr.B00173 Eucalyptus grandis HOM05D000464 ORTHO05D006292 8.6e-09 63.2 38 68.4
Lsat_1_v5_gn_4_78400 Lactuca sativa HOM05D000464 ORTHO05D006292 8.6e-09 63.2 38 68.4
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 8.6e-09 63.2 36 66.7
Actinidia36765 Actinidia chinensis HOM05D000464 ORTHO05D006292 1.1e-08 62.8 36 75.0
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 1.1e-08 62.8 38 63.2
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 1.1e-08 62.8 38 63.2
vmacro16690 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.1e-08 62.8 36 75.0
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.1e-08 62.8 40 67.5
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 1.1e-08 62.8 40 67.5
MSTRG.4338 Avicennia marina HOM05D000464 ORTHO05D006292 1.5e-08 62.4 37 70.3
Gohir.A09G244600 Gossypium hirsutum HOM05D000464 ORTHO05D006292 1.5e-08 62.4 36 69.4
Gohir.D09G245500 Gossypium hirsutum HOM05D000464 ORTHO05D006292 1.5e-08 62.4 36 69.4
Gorai.006G269900 Gossypium raimondii HOM05D000464 ORTHO05D006292 1.5e-08 62.4 36 69.4
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 1.5e-08 62.4 36 72.2
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 1.9e-08 62.0 38 60.5
Lj9A440T62 Lonicera japonica HOM05D000464 ORTHO05D006292 1.9e-08 62.0 36 72.2
Lj1g0006305 Lotus japonicus HOM05D000464 ORTHO05D006292 1.9e-08 62.0 36 66.7
Sc04g0001170 Simmondsia chinensis HOM05D000464 ORTHO05D006292 1.9e-08 62.0 38 63.2
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 2.5e-08 61.6 38 68.4
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 2.5e-08 61.6 36 72.2
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 2.5e-08 61.6 37 62.2
Potri.015G087200 Populus trichocarpa HOM05D000464 ORTHO05D006292 2.5e-08 61.6 38 71.1
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 2.5e-08 61.6 38 71.1
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 3.3e-08 61.2 36 69.4
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 3.3e-08 61.2 35 74.3
MD06G1161200 Malus domestica HOM05D000464 ORTHO05D006292 3.3e-08 61.2 36 72.2
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 3.3e-08 61.2 38 63.2
CiPaw.11G014000 Carya illinoinensis HOM05D000464 ORTHO05D006292 4.3e-08 60.8 36 69.4
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 4.3e-08 60.8 38 65.8
FvH4_5g06790 Fragaria vesca HOM05D000464 ORTHO05D006292 4.3e-08 60.8 36 69.4
FAN04G0526 Fragaria x ananassa HOM05D000464 ORTHO05D006292 4.3e-08 60.8 36 69.4
FAN08G0579 Fragaria x ananassa HOM05D000464 ORTHO05D006292 4.3e-08 60.8 36 69.4
FAN13G2293 Fragaria x ananassa HOM05D000464 ORTHO05D006292 4.3e-08 60.8 36 69.4
FAN18G1884 Fragaria x ananassa HOM05D000464 ORTHO05D000408 4.3e-08 60.8 36 69.4
Prupe.5G160700 Prunus persica HOM05D000464 ORTHO05D006292 4.3e-08 60.8 36 69.4
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 5.6e-08 60.5 36 66.7
Duzib205G1058 Durio zibethinus HOM05D000464 ORTHO05D006292 5.6e-08 60.5 36 66.7
MD14G1166400 Malus domestica HOM05D000464 ORTHO05D006292 5.6e-08 60.5 36 69.4
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 5.6e-08 60.5 37 67.6
Thecc.03G119100 Theobroma cacao HOM05D000464 ORTHO05D006292 5.6e-08 60.5 36 66.7
CANSAT80G2689 Cannabis sativa HOM05D000464 ORTHO05D006292 9.5e-08 59.7 36 66.7
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 9.5e-08 59.7 37 70.3
QL10p005870 Quercus lobata HOM05D000464 ORTHO05D006292 9.5e-08 59.7 36 66.7
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.2e-07 59.3 38 60.5
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.2e-07 59.3 37 64.9
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 1.2e-07 59.3 38 57.9
SalBow6G1450 Salvia bowleyana HOM05D000464 ORTHO05D006292 1.6e-07 58.9 37 67.6
SalBow6G2987 Salvia bowleyana HOM05D000464 ORTHO05D006292 1.6e-07 58.9 37 67.6
CDE06G2114 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 2.1e-07 58.5 36 63.9
Manes.14G056900 Manihot esculenta HOM05D000464 ORTHO05D006292 2.1e-07 58.5 37 67.6
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 2.1e-07 58.5 38 63.2
Sed0016445 Sechium edule HOM05D000464 ORTHO05D006292 2.1e-07 58.5 36 69.4
BcaB08g35394 Brassica carinata HOM05D000464 ORTHO05D006292 2.8e-07 58.2 38 57.9
BcaC04g20812 Brassica carinata HOM05D000464 ORTHO05D006292 2.8e-07 58.2 38 57.9
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 2.8e-07 58.2 38 57.9
C09p38870 Brassica napus HOM05D000464 ORTHO05D006292 2.8e-07 58.2 38 57.9
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 2.8e-07 58.2 38 57.9
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 2.8e-07 58.2 36 63.9
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 2.8e-07 58.2 38 57.9
Nn4g22524 Nelumbo nucifera HOM05D000464 ORTHO05D006292 2.8e-07 58.2 36 66.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 3.6e-07 57.8 36 66.7
THA.LOC104824993 Tarenaya hassleriana HOM05D000464 ORTHO05D006292 3.6e-07 57.8 38 57.9
TWI39G0801 Tripterygium wilfordii HOM05D000464 ORTHO05D006292 3.6e-07 57.8 38 63.2
Lj5A133T97 Lonicera japonica HOM05D000464 ORTHO05D006292 6.2e-07 57.0 36 63.9
Mapoly0102s0055 Marchantia polymorpha HOM05D000464 ORTHO05D006292 6.2e-07 57.0 29 75.9
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 8.1e-07 56.6 36 66.7
Gorai.008G203700 Gossypium raimondii HOM05D000464 ORTHO05D006292 8.1e-07 56.6 36 55.6
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 1.1e-06 56.2 38 55.3
Aqoxy5G03645 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 1.4e-06 55.8 37 59.5
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.4e-06 55.8 38 55.3
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.4e-06 55.8 38 55.3
Manes.06G112800 Manihot esculenta HOM05D000464 ORTHO05D006292 1.4e-06 55.8 36 69.4
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.3e-06 55.1 36 66.7
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.3e-06 55.1 36 66.7
unitig_21.g20437 Utricularia gibba HOM05D000464 ORTHO05D006292 2.3e-06 55.1 37 67.6
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 3.1e-06 54.7 40 60.0


User provided reference genes

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