Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 0.0e+00 1203.0 628 100.0
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 0.0e+00 1158.3 603 99.7
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 0.0e+00 1117.1 603 95.9
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 0.0e+00 1111.3 603 95.2
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 0.0e+00 1105.5 604 95.0
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 0.0e+00 1104.4 603 95.4
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 7.5e-307 1056.6 606 90.8
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 2.6e-283 978.4 601 83.2
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 1.1e-281 973.0 603 81.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 2.4e-281 971.8 601 83.9
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 9.2e-281 969.9 611 80.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.7e-280 968.4 601 82.2
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 1.0e-279 966.5 599 82.0
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.3e-278 961.1 601 81.9
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 5.6e-278 960.7 601 82.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.2e-277 959.5 601 81.5
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.1e-277 958.7 601 82.5
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.4e-276 956.1 657 77.0
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.4e-274 947.2 620 79.4
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 8.4e-274 946.8 601 79.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.9e-273 945.7 601 80.4
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 3.2e-273 944.9 601 80.5
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.2e-272 943.0 601 80.4
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.7e-271 939.1 603 79.6
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 9.6e-270 933.3 609 79.0
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.1e-269 932.2 592 79.7
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.1e-269 932.2 597 80.2
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 6.2e-269 930.6 625 77.3
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 1.4e-268 929.5 617 77.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 3.1e-268 928.3 601 79.2
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 9.0e-268 926.8 496 96.6
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 3.4e-267 924.9 593 79.4
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 3.4e-267 924.9 592 79.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 4.4e-267 924.5 601 78.7
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.6e-267 923.7 589 81.2
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 7.6e-267 923.7 601 78.7
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 9.9e-267 923.3 601 78.9
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.9e-266 921.8 608 78.9
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 4.9e-266 921.0 604 78.6
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 9.3e-265 916.8 601 77.9
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.7e-263 912.5 601 78.0
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.3e-263 912.1 603 77.6
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 5.1e-263 911.0 598 77.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.5e-262 909.4 570 81.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.9e-262 909.1 601 77.9
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.3e-262 907.9 602 77.6
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.3e-261 906.4 595 78.7
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.6e-261 906.0 600 77.2
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.0e-260 901.4 599 76.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 5.3e-260 901.0 596 77.7
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 6.9e-260 900.6 599 77.0
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-259 899.4 649 73.0
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.3e-258 896.3 621 75.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.3e-258 896.3 603 76.6
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.7e-258 896.0 601 76.5
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.8e-258 894.8 596 77.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 3.8e-258 894.8 606 75.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 8.4e-258 893.6 567 79.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.4e-257 892.9 601 76.4
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.9e-257 892.5 606 75.2
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 2.4e-257 892.1 601 76.2
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 2.4e-257 892.1 601 76.2
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 2.4e-257 892.1 601 76.2
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 3.2e-257 891.7 601 76.2
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 4.2e-257 891.3 596 77.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.4e-257 891.0 602 76.1
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 7.1e-257 890.6 596 76.7
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 9.3e-257 890.2 601 76.2
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 9.3e-257 890.2 594 76.4
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 9.3e-257 890.2 602 76.4
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.2e-256 889.8 599 76.1
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.7e-256 888.6 603 75.6
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 2.7e-256 888.6 606 75.1
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.5e-256 888.3 602 75.9
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 3.5e-256 888.3 601 75.9
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 4.6e-256 887.9 592 75.8
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.3e-255 886.3 606 75.2
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 3.0e-255 885.2 598 75.8
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.0e-255 885.2 606 75.1
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 5.1e-255 884.4 606 74.9
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.5e-254 882.9 599 76.6
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 2.5e-254 882.1 597 75.9
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 3.3e-254 881.7 544 81.8
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.6e-254 880.9 607 74.6
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 9.6e-254 880.2 599 76.5
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.8e-253 878.6 597 75.9
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 4.8e-253 877.9 606 74.1
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.8e-252 875.9 601 75.0
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 1.8e-252 875.9 614 75.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.9e-252 874.0 613 75.0
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.2e-251 873.2 634 72.9
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.0e-251 872.5 600 75.0
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 2.2e-250 869.0 642 72.9
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.4e-250 867.5 596 75.8
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 3.2e-249 865.1 682 68.5
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.0e-247 858.6 598 73.9
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.5e-246 855.5 597 73.7
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.3e-245 853.2 603 73.1
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 2.1e-245 852.4 603 73.0
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 8.2e-245 850.5 621 71.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 1.1e-244 850.1 601 72.2
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.2e-243 846.7 585 75.6
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 4.9e-242 841.3 598 74.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 1.1e-241 840.1 597 72.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 7.1e-241 837.4 564 75.9
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-236 823.5 564 76.6
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 8.5e-234 813.9 655 64.6
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.8e-231 803.9 594 71.5
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.8e-231 803.9 594 71.9
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.2e-225 785.4 603 68.5
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.6e-222 775.8 502 77.7
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 6.3e-213 744.6 480 79.6
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.5e-211 738.8 613 64.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 5.9e-211 738.0 598 63.5
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.0e-210 737.3 478 78.7
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.7e-208 729.2 603 62.4
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.5e-193 678.3 440 79.8
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.8e-191 673.3 552 67.0
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 8.9e-191 671.0 428 79.2
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.1e-184 648.3 502 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.6e-171 605.5 605 53.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 2.2e-165 586.6 576 53.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.6e-163 578.9 601 51.2
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.1e-159 566.2 316 93.7
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.7e-155 553.1 439 63.3
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.4e-149 531.9 288 94.8
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 1.6e-144 517.3 366 74.0
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 3.1e-143 513.1 328 79.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 2.8e-136 490.0 610 46.4
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 5.8e-134 482.3 418 61.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 9.6e-129 464.9 577 44.9
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-127 459.9 531 52.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.5e-116 423.7 281 79.4
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.2e-110 404.8 249 79.9
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.9e-102 375.9 437 49.2
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.8e-93 346.7 316 61.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 9.4e-92 342.0 273 67.8
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 3.2e-71 273.9 677 31.5
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 9.5e-68 262.3 545 34.3
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.6e-67 260.4 182 76.4
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.4e-63 248.4 152 81.6
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 7.0e-63 246.1 156 80.1
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 5.2e-58 229.9 154 76.6
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.8e-46 189.5 102 92.2
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.9e-45 187.2 107 87.9
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.1e-39 169.1 96 87.5
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 5.1e-37 160.2 629 27.5
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 6.4e-32 143.3 97 73.2
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.4e-31 140.2 120 55.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-27 129.0 69 85.5
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.6e-27 128.6 186 43.5
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.8e-27 127.1 97 60.8
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.6e-25 121.3 66 89.4
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 5.4e-23 113.6 72 72.2
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 2.1e-19 101.7 635 24.4
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 4.8e-19 100.5 61 85.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.5e-17 95.5 78 56.4
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 3.8e-16 90.9 54 83.3
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 4.2e-15 87.4 49 85.7
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 9.3e-15 86.3 95 56.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.1e-14 85.1 48 85.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 6.0e-14 83.6 199 33.7
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.5e-12 79.0 71 50.7
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.6e-09 68.2 54 68.5
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 3.4e-09 67.8 54 68.5


User provided reference genes

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